Repositories list

• waldo

  Public
  Python

  •0•3•109•0•Updated Mar 3, 2025Mar 3, 2025

• ADNA-Tools

  Public
  This project is a collection of tools for bioinformatic processing of ancient DNA data at the Harvard Medical School Reich Lab.

  Java

  •

  Other

  •2•18•0•0•Updated Feb 7, 2025Feb 7, 2025

• AdmixTools

  Public
  Tools test whether admixture occurred and more

  C

  •65•188•56•0•Updated Sep 6, 2024Sep 6, 2024

• cTools

  Public
  Tools for accessing SGDP lite data

  C

  •6•7•0•1•Updated May 13, 2024May 13, 2024

• EIG

  Public
  Eigen tools by Nick Patterson and Alkes Price lab

  C

  •

  Other

  •60•183•55•3•Updated Nov 3, 2023Nov 3, 2023

• MutationRateCode

  Public
  by Mark Lipson

  MATLAB

  •0•3•0•0•Updated Feb 7, 2022Feb 7, 2022

• refinedate01

  Public
  C

  •1•0•0•0•Updated Apr 14, 2021Apr 14, 2021

• adna-workflow

  Public
  Workflow for processing Illumina sequencing runs for ancient human DNA

  Python

  •

  Other

  •5•20•7•0•Updated Oct 29, 2020Oct 29, 2020

• adna

  Public
  Processing WGS aDNA data using the ReichLab protocol

  C

  •3•12•2•1•Updated Mar 8, 2019Mar 8, 2019

• PMDtools

  Public
  Compute postmortem damage patterns and decontaminate ancient genomes

  Python

  •

  GNU General Public License v3.0

  •7•0•0•0•Updated Mar 7, 2018Mar 7, 2018

• XP-CLR

  Public
  XP-CLR (Chen et al. 2010) uses allele frequency differentiation at linked loci to detect selective sweeps.

  0•0•1•0•Updated Mar 16, 2015Mar 16, 2015