Repositories list

• GNPSDocumentation

  Public

  CCMS-UCSD/GNPSDocumentation’s past year of commit activity
  Documentation for GNPS and related tools as written in mkdocs

  metabolomicsgnpsnaturalproducts+ 1massspectrometery

  HTML

  •

  MIT License

  •89•43•37•6•Updated Dec 10, 2025Dec 10, 2025

• MassIVEDocumentation

  Public

  CCMS-UCSD/MassIVEDocumentation’s past year of commit activity
  Documentation for MassIVE workflows and Website

  bigdataproteomicsmassspectrometry

  Python

  •

  MIT License

  •6•4•4•0•Updated Jul 31, 2025Jul 31, 2025

• CCMSWorkflowUtils

  Public
  CCMS Workflow Utilities

  Java

  •1•0•0•2•Updated Jul 4, 2025Jul 4, 2025

• CCMS-Integration-Tests

  Public

  CCMS-UCSD/CCMS-Integration-Tests’s past year of commit activity
  Integration Testing Suite for CCMS Services

  Python

  •1•1•4•1•Updated Mar 28, 2025Mar 28, 2025

• MzTabUtils

  Public
  CCMS mzTab Utilties

  Java

  •0•0•2•3•Updated Oct 3, 2024Oct 3, 2024

• GNPS_Workflows

  Public

  CCMS-UCSD/GNPS_Workflows’s past year of commit activity
  Public Workflows at GNPS

  metabolomicsmass-spectrometrygnps+ 3molecularnetworkingnaturalproductsuntargeted

  HTML

  •

  Other

  •47•64•241•31•Updated Jan 30, 2024Jan 30, 2024

• GNPS_TrainingTutorialModules

  Public

  CCMS-UCSD/GNPS_TrainingTutorialModules’s past year of commit activity
  Standard Tutorial Modules for GNPS Workshops

  metabolomicsgnpsnaturalproducts+ 1massspectrometry

  MIT License

  •8•6•6•1•Updated Oct 11, 2023Oct 11, 2023

• CCMS-Workflow-Tools

  Public
  Standalone CCMS workflow tools

  0•0•0•0•Updated Apr 3, 2023Apr 3, 2023

• hpp_inspector

  Public
  Python

  •0•0•10•4•Updated Jan 13, 2023Jan 13, 2023

• CCMSDeployments

  Public
  Deployment utilities for CCMS

  Python

  •

  Creative Commons Zero v1.0 Universal

  •0•2•7•0•Updated Oct 21, 2022Oct 21, 2022

• csv-to-sqlite

  Public
  A command-line tool that copies data from CSV files into a SQLite database.

  Python

  •

  MIT License

  •18•0•0•0•Updated May 10, 2022May 10, 2022

• generate_spectrum_index

  Public
  Python

  •0•0•0•1•Updated Mar 24, 2022Mar 24, 2022

• MzTabConverter

  Public
  CCMS mzTab converters

  Shell

  •0•0•0•0•Updated Nov 10, 2020Nov 10, 2020

• workspace

  Public
  first push to github

  HTML

  •2•0•0•0•Updated Jan 28, 2020Jan 28, 2020

• ProteoSAFe

  Public
  JavaScript

  •

  Other

  •0•0•1•1•Updated Dec 15, 2019Dec 15, 2019

• MassIVEKBWorkflows

  Public
  Python

  •1•0•0•1•Updated May 20, 2019May 20, 2019

• param-medic

  Public
  Python

  •0•0•0•0•Updated Oct 12, 2018Oct 12, 2018

• MassIVEWorkflows

  Public
  Python

  •

  Other

  •0•0•0•0•Updated Feb 8, 2018Feb 8, 2018

• CCMS-sps

  Public
  CCMS SPS Code Release for GNPS Manuscript

  C++

  •

  Other

  •1•0•0•0•Updated Apr 28, 2016Apr 28, 2016