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Apply some fixes to WDL examples #689

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merged 4 commits into from
Jan 23, 2025
Merged

Apply some fixes to WDL examples #689

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5fc39f8
Delete conflicting exclude_output section, fix wrong var, missing
stxue1 Sep 30, 2024
5c48450
Fix wc command
stxue1 Sep 30, 2024
89c5195
Change incorrect json output
stxue1 Sep 30, 2024
9902378
Add missing output
stxue1 Sep 30, 2024
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20 changes: 8 additions & 12 deletions SPEC.md
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Original file line number Diff line number Diff line change
Expand Up @@ -1312,7 +1312,7 @@ workflow string_to_file {
File path2 = path1

output {
Boolean paths_equal = infile == path3
Boolean paths_equal = infile == path2
}
}
```
Expand Down Expand Up @@ -3943,14 +3943,6 @@ Example output:
"optional_output.file_array": ["example1.txt", null]
}
```

Test config:

```json
{
"exclude_output": ["example1", "file_array"]
}
```
</p>
</details>

Expand Down Expand Up @@ -4581,7 +4573,7 @@ task test_hints {
}

command <<<
wc -l ~{foo}
wc -l < ~{foo}
>>>

output {
Expand Down Expand Up @@ -4616,7 +4608,7 @@ Example output:

```json
{
"test_hints.num_lines": 3
"test_hints.num_lines": 2
}
```
</p>
Expand Down Expand Up @@ -4701,7 +4693,9 @@ Example input:
Example output:

```json
{}
{
"input_hint.experience": []
}
```
</p>
</details>
Expand Down Expand Up @@ -8594,6 +8588,8 @@ Example output:

```json
{
"test_transpose.expected": [[0, 3], [1, 4], [2, 5]],
"test_transpose.out": [[0, 3], [1, 4], [2, 5]],
"test_transpose.is_true": true
}
```
Expand Down