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Generate evidence strings step by step

Gautier Koscielny edited this page Feb 14, 2018 · 2 revisions

Login to the Open Targets google cloud at https://cloud.google.com/

gcloud auth --project=open-targets login

To generate the PheWAS Catalog evidence strings on the command line:

python CommandLine.py --phewas --schema-version=1.2.8

To generate the Gene2Phenotype evidence strings on the command line:

python CommandLine.py --gene2phenotype

To generate the GenomicsEnglandPanelApp evidence strings on the command line:

python CommandLine.py --genomicsengland
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