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remove folder related to ks_statistic_spatial
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scripts/create_datasets/test_resources.sh

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@@ -48,7 +48,7 @@ viash run src/process_datasets/generate_sim_spatialcluster/config.vsh.yaml -- \
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--output_sp "$OUTPUT_DIR/simulated_dataset_processed.h5ad"
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# run a metric
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viash run src/metrics/ks_statistic_spatial/config.vsh.yaml -- \
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viash run src/metrics/ks_statistic_gene_cell/config.vsh.yaml -- \
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--input_spatial_dataset "$OUTPUT_DIR/dataset_sp.h5ad" \
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--input_singlecell_dataset "$OUTPUT_DIR/dataset_sc.h5ad" \
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--input_simulated_dataset "$OUTPUT_DIR/simulated_dataset_processed.h5ad" \

src/workflows/run_benchmark/config.vsh.yaml

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@@ -62,7 +62,6 @@ dependencies:
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- name: metrics/downstream
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- name: metrics/ks_statistic_gene_cell
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- name: metrics/ks_statistic_sc_features
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- name: metrics/ks_statistic_spatial
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- name: process_datasets/generate_sim_spatialcluster
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runners:
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- type: nextflow

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