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lines changed Original file line number Diff line number Diff line change @@ -48,7 +48,7 @@ viash run src/process_datasets/generate_sim_spatialcluster/config.vsh.yaml -- \
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--output_sp " $OUTPUT_DIR /simulated_dataset_processed.h5ad"
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# run a metric
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- viash run src/metrics/ks_statistic_spatial /config.vsh.yaml -- \
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+ viash run src/metrics/ks_statistic_gene_cell /config.vsh.yaml -- \
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--input_spatial_dataset " $OUTPUT_DIR /dataset_sp.h5ad" \
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--input_singlecell_dataset " $OUTPUT_DIR /dataset_sc.h5ad" \
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--input_simulated_dataset " $OUTPUT_DIR /simulated_dataset_processed.h5ad" \
Original file line number Diff line number Diff line change @@ -62,7 +62,6 @@ dependencies:
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- name : metrics/downstream
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- name : metrics/ks_statistic_gene_cell
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- name : metrics/ks_statistic_sc_features
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- - name : metrics/ks_statistic_spatial
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- name : process_datasets/generate_sim_spatialcluster
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runners :
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- type : nextflow
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