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openproblems-bio / task_cyto_batch_integration Public

generated from openproblems-bio/task_template

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New metric - ratio of inconsistent peak#114

Open

ghar1821 wants to merge 16 commits intomainopenproblems-bio/task_cyto_batch_integration:mainfrom

update_n_inconsistent_peakopenproblems-bio/task_cyto_batch_integration:update_n_inconsistent_peakCopy head branch name to clipboard

Conversation Commits16 (16)Checks Files changed

Open

New metric - ratio of inconsistent peak#114
ghar1821 wants to merge 16 commits intomainfrom
update_n_inconsistent_peak

Commits

Commits on Oct 12, 2025

first prototype of new implementation
ghar1821
committed
add scikit tda and persistent peak as alternative output
ghar1821
committed
update description
ghar1821
committed
update workflow script
ghar1821
committed
add missing comma - facepalm
ghar1821
committed

Commits on Oct 13, 2025

add small epsilon to harmonypy to fix kmeans bug
ghar1821
committed
increase bras chunk to 1000
ghar1821
committed

Commits on Oct 14, 2025

testing bras with jax gpu
ghar1821
committed
testing bras with cuda
ghar1821
committed
missing pip and sci-b metrics *facepalm
ghar1821
committed
downgrading image
ghar1821
committed
update the image name
ghar1821
committed
testing openproblems image
ghar1821
committed
undo changes to run script
ghar1821
committed
downgrade scib metrics package
ghar1821
committed
reverting as gpu doesn't work
ghar1821
committed

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