deploy: 41fa6f8

Author: DriesSchaumont

target/_private/executable/tiledb/move_mudata_obsm_to_tiledb/.config.vsh.yaml

@@ -1,6 +1,6 @@
 name: "move_mudata_obsm_to_tiledb"
 namespace: "tiledb"
-version: "v3.0.0"
+version: "3.0.0"
 authors:
 - name: "Dries Schaumont"
   roles:
@@ -194,7 +194,7 @@ engines:
 - type: "docker"
   id: "docker"
   image: "python:3.12"
-  target_tag: "v3.0.0"
+  target_tag: "3.0.0"
   namespace_separator: "/"
   setup:
   - type: "python"
@@ -234,9 +234,9 @@ build_info:
   output: "target/_private/executable/tiledb/move_mudata_obsm_to_tiledb"
   executable: "target/_private/executable/tiledb/move_mudata_obsm_to_tiledb/move_mudata_obsm_to_tiledb"
   viash_version: "0.9.4"
-  git_commit: "03132f98cca92079ce154fc0bfdd51db05cd3350"
+  git_commit: "706b5ce24d313dcf947b7d9fe929630f1ad204e7"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "2.1.0-1-g03132f98cca"
+  git_tag: "2.1.0-2-g706b5ce24d3"
 package_config:
   name: "openpipeline"
   summary: "Best-practice workflows for single-cell multi-omics analyses.\n"
@@ -266,8 +266,8 @@ package_config:
   - ".resources += {path: '/src/workflows/utils/labels.config', dest: 'nextflow_labels.config'}\n\
     .runners[.type == 'nextflow'].config.script := 'includeConfig(\"nextflow_labels.config\"\
     )'"
-  - ".version := \"v3.0.0\""
-  - ".engines[.type == 'docker'].target_tag := 'v3.0.0'"
+  - ".version := \"3.0.0\""
+  - ".engines[.type == 'docker'].target_tag := '3.0.0'"
   keywords:
   - "single-cell"
   - "multimodal"

target/_private/executable/tiledb/move_mudata_obsm_to_tiledb/move_mudata_obsm_to_tiledb

@@ -1,6 +1,6 @@
 #!/usr/bin/env bash
 
-# move_mudata_obsm_to_tiledb v3.0.0
+# move_mudata_obsm_to_tiledb 3.0.0
 # 
 # This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 # work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -454,10 +454,10 @@ RUN pip install --upgrade pip && \
 
 LABEL org.opencontainers.image.authors="Dries Schaumont"
 LABEL org.opencontainers.image.description="Companion container for running component tiledb move_mudata_obsm_to_tiledb"
-LABEL org.opencontainers.image.created="2025-08-22T15:37:11Z"
+LABEL org.opencontainers.image.created="2025-08-22T17:59:09Z"
 LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
-LABEL org.opencontainers.image.revision="03132f98cca92079ce154fc0bfdd51db05cd3350"
-LABEL org.opencontainers.image.version="v3.0.0"
+LABEL org.opencontainers.image.revision="706b5ce24d313dcf947b7d9fe929630f1ad204e7"
+LABEL org.opencontainers.image.version="3.0.0"
 
 VIASHDOCKER
   fi
@@ -574,7 +574,7 @@ VIASH_DOCKER_RUN_ARGS=(-i --rm --env AWS_ACCESS_KEY_ID --env AWS_SECRET_ACCESS_K
 
 # ViashHelp: Display helpful explanation about this executable
 function ViashHelp {
-  echo "move_mudata_obsm_to_tiledb v3.0.0"
+  echo "move_mudata_obsm_to_tiledb 3.0.0"
   echo ""
   echo "Move .obsm items from a MuData modality to an existing tileDB database."
   echo "The .obsm keys should not exist in the database yet; and the observations from"
@@ -664,7 +664,7 @@ while [[ $# -gt 0 ]]; do
             shift 1
             ;;
         --version)
-            echo "move_mudata_obsm_to_tiledb v3.0.0"
+            echo "move_mudata_obsm_to_tiledb 3.0.0"
             exit
             ;;
         --input_uri)
@@ -836,7 +836,7 @@ if [[ "$VIASH_ENGINE_TYPE" == "docker" ]]; then
 
   # determine docker image id
   if [[ "$VIASH_ENGINE_ID" == 'docker' ]]; then
-    VIASH_DOCKER_IMAGE_ID='ghcr.io/openpipelines-bio/openpipeline/tiledb/move_mudata_obsm_to_tiledb:v3.0.0'
+    VIASH_DOCKER_IMAGE_ID='ghcr.io/openpipelines-bio/openpipeline/tiledb/move_mudata_obsm_to_tiledb:3.0.0'
   fi
 
   # print dockerfile

target/_private/nextflow/tiledb/move_mudata_obsm_to_tiledb/.config.vsh.yaml

@@ -1,6 +1,6 @@
 name: "move_mudata_obsm_to_tiledb"
 namespace: "tiledb"
-version: "v3.0.0"
+version: "3.0.0"
 authors:
 - name: "Dries Schaumont"
   roles:
@@ -194,7 +194,7 @@ engines:
 - type: "docker"
   id: "docker"
   image: "python:3.12"
-  target_tag: "v3.0.0"
+  target_tag: "3.0.0"
   namespace_separator: "/"
   setup:
   - type: "python"
@@ -234,9 +234,9 @@ build_info:
   output: "target/_private/nextflow/tiledb/move_mudata_obsm_to_tiledb"
   executable: "target/_private/nextflow/tiledb/move_mudata_obsm_to_tiledb/main.nf"
   viash_version: "0.9.4"
-  git_commit: "03132f98cca92079ce154fc0bfdd51db05cd3350"
+  git_commit: "706b5ce24d313dcf947b7d9fe929630f1ad204e7"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "2.1.0-1-g03132f98cca"
+  git_tag: "2.1.0-2-g706b5ce24d3"
 package_config:
   name: "openpipeline"
   summary: "Best-practice workflows for single-cell multi-omics analyses.\n"
@@ -266,8 +266,8 @@ package_config:
   - ".resources += {path: '/src/workflows/utils/labels.config', dest: 'nextflow_labels.config'}\n\
     .runners[.type == 'nextflow'].config.script := 'includeConfig(\"nextflow_labels.config\"\
     )'"
-  - ".version := \"v3.0.0\""
-  - ".engines[.type == 'docker'].target_tag := 'v3.0.0'"
+  - ".version := \"3.0.0\""
+  - ".engines[.type == 'docker'].target_tag := '3.0.0'"
   keywords:
   - "single-cell"
   - "multimodal"

target/_private/nextflow/tiledb/move_mudata_obsm_to_tiledb/main.nf

@@ -1,4 +1,4 @@
-// move_mudata_obsm_to_tiledb v3.0.0
+// move_mudata_obsm_to_tiledb 3.0.0
 // 
 // This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -3035,7 +3035,7 @@ meta = [
   "config": processConfig(readJsonBlob('''{
   "name" : "move_mudata_obsm_to_tiledb",
   "namespace" : "tiledb",
-  "version" : "v3.0.0",
+  "version" : "3.0.0",
   "authors" : [
     {
       "name" : "Dries Schaumont",
@@ -3276,7 +3276,7 @@ meta = [
       "type" : "docker",
       "id" : "docker",
       "image" : "python:3.12",
-      "target_tag" : "v3.0.0",
+      "target_tag" : "3.0.0",
       "namespace_separator" : "/",
       "setup" : [
         {
@@ -3330,9 +3330,9 @@ meta = [
     "engine" : "docker",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/_private/nextflow/tiledb/move_mudata_obsm_to_tiledb",
     "viash_version" : "0.9.4",
-    "git_commit" : "03132f98cca92079ce154fc0bfdd51db05cd3350",
+    "git_commit" : "706b5ce24d313dcf947b7d9fe929630f1ad204e7",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "2.1.0-1-g03132f98cca"
+    "git_tag" : "2.1.0-2-g706b5ce24d3"
   },
   "package_config" : {
     "name" : "openpipeline",
@@ -3358,8 +3358,8 @@ meta = [
     "target" : "/home/runner/work/openpipeline/openpipeline/target",
     "config_mods" : [
       ".resources += {path: '/src/workflows/utils/labels.config', dest: 'nextflow_labels.config'}\n.runners[.type == 'nextflow'].config.script := 'includeConfig(\\"nextflow_labels.config\\")'",
-      ".version := \\"v3.0.0\\"",
-      ".engines[.type == 'docker'].target_tag := 'v3.0.0'"
+      ".version := \\"3.0.0\\"",
+      ".engines[.type == 'docker'].target_tag := '3.0.0'"
     ],
     "keywords" : [
       "single-cell",
@@ -3904,7 +3904,7 @@ meta["defaults"] = [
   "container" : {
     "registry" : "ghcr.io",
     "image" : "openpipelines-bio/openpipeline/tiledb/move_mudata_obsm_to_tiledb",
-    "tag" : "v3.0.0"
+    "tag" : "3.0.0"
   },
   "label" : [
     "highmem",

target/_private/nextflow/tiledb/move_mudata_obsm_to_tiledb/nextflow.config

@@ -2,7 +2,7 @@ manifest {
   name = 'tiledb/move_mudata_obsm_to_tiledb'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = 'v3.0.0'
+  version = '3.0.0'
   description = 'Move .obsm items from a MuData modality to an existing tileDB database.\nThe .obsm keys should not exist in the database yet; and the observations from the modality and \ntheir order should match with what is already present the tiledb database.\n'
   author = 'Dries Schaumont'
 }

target/_private/nextflow/workflows/multiomics/split_h5mu/.config.vsh.yaml

@@ -1,6 +1,6 @@
 name: "split_h5mu"
 namespace: "workflows/multiomics"
-version: "v3.0.0"
+version: "3.0.0"
 authors:
 - name: "Dries Schaumont"
   roles:
@@ -209,9 +209,9 @@ build_info:
   output: "target/_private/nextflow/workflows/multiomics/split_h5mu"
   executable: "target/_private/nextflow/workflows/multiomics/split_h5mu/main.nf"
   viash_version: "0.9.4"
-  git_commit: "03132f98cca92079ce154fc0bfdd51db05cd3350"
+  git_commit: "706b5ce24d313dcf947b7d9fe929630f1ad204e7"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "2.1.0-1-g03132f98cca"
+  git_tag: "2.1.0-2-g706b5ce24d3"
   dependencies:
   - "target/nextflow/dataflow/split_h5mu"
 package_config:
@@ -243,7 +243,7 @@ package_config:
   - ".resources += {path: '/src/workflows/utils/labels.config', dest: 'nextflow_labels.config'}\n\
     .runners[.type == 'nextflow'].config.script := 'includeConfig(\"nextflow_labels.config\"\
     )'"
-  - ".version := \"v3.0.0\""
+  - ".version := \"3.0.0\""
   keywords:
   - "single-cell"
   - "multimodal"

target/_private/nextflow/workflows/multiomics/split_h5mu/main.nf

@@ -1,4 +1,4 @@
-// split_h5mu v3.0.0
+// split_h5mu 3.0.0
 // 
 // This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -3035,7 +3035,7 @@ meta = [
   "config": processConfig(readJsonBlob('''{
   "name" : "split_h5mu",
   "namespace" : "workflows/multiomics",
-  "version" : "v3.0.0",
+  "version" : "3.0.0",
   "authors" : [
     {
       "name" : "Dries Schaumont",
@@ -3305,9 +3305,9 @@ meta = [
     "engine" : "native",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/_private/nextflow/workflows/multiomics/split_h5mu",
     "viash_version" : "0.9.4",
-    "git_commit" : "03132f98cca92079ce154fc0bfdd51db05cd3350",
+    "git_commit" : "706b5ce24d313dcf947b7d9fe929630f1ad204e7",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "2.1.0-1-g03132f98cca"
+    "git_tag" : "2.1.0-2-g706b5ce24d3"
   },
   "package_config" : {
     "name" : "openpipeline",
@@ -3333,7 +3333,7 @@ meta = [
     "target" : "/home/runner/work/openpipeline/openpipeline/target",
     "config_mods" : [
       ".resources += {path: '/src/workflows/utils/labels.config', dest: 'nextflow_labels.config'}\n.runners[.type == 'nextflow'].config.script := 'includeConfig(\\"nextflow_labels.config\\")'",
-      ".version := \\"v3.0.0\\""
+      ".version := \\"3.0.0\\""
     ],
     "keywords" : [
       "single-cell",

target/_private/nextflow/workflows/multiomics/split_h5mu/nextflow.config

@@ -2,7 +2,7 @@ manifest {
   name = 'workflows/multiomics/split_h5mu'
   mainScript = 'main.nf'
   nextflowVersion = '!>=20.12.1-edge'
-  version = 'v3.0.0'
+  version = '3.0.0'
   description = 'Split the samples of a single modality from a .h5mu (multimodal) sample into seperate .h5mu files based on the values of an .obs column of this modality. '
   author = 'Dries Schaumont'
 }

target/_private/nextflow/workflows/multiomics/split_modalities/.config.vsh.yaml

@@ -1,6 +1,6 @@
 name: "split_modalities"
 namespace: "workflows/multiomics"
-version: "v3.0.0"
+version: "3.0.0"
 authors:
 - name: "Dries Schaumont"
   roles:
@@ -180,9 +180,9 @@ build_info:
   output: "target/_private/nextflow/workflows/multiomics/split_modalities"
   executable: "target/_private/nextflow/workflows/multiomics/split_modalities/main.nf"
   viash_version: "0.9.4"
-  git_commit: "03132f98cca92079ce154fc0bfdd51db05cd3350"
+  git_commit: "706b5ce24d313dcf947b7d9fe929630f1ad204e7"
   git_remote: "https://github.com/openpipelines-bio/openpipeline"
-  git_tag: "2.1.0-1-g03132f98cca"
+  git_tag: "2.1.0-2-g706b5ce24d3"
   dependencies:
   - "target/nextflow/dataflow/split_modalities"
 package_config:
@@ -214,7 +214,7 @@ package_config:
   - ".resources += {path: '/src/workflows/utils/labels.config', dest: 'nextflow_labels.config'}\n\
     .runners[.type == 'nextflow'].config.script := 'includeConfig(\"nextflow_labels.config\"\
     )'"
-  - ".version := \"v3.0.0\""
+  - ".version := \"3.0.0\""
   keywords:
   - "single-cell"
   - "multimodal"

target/_private/nextflow/workflows/multiomics/split_modalities/main.nf

@@ -1,4 +1,4 @@
-// split_modalities v3.0.0
+// split_modalities 3.0.0
 // 
 // This wrapper script is auto-generated by viash 0.9.4 and is thus a derivative
 // work thereof. This software comes with ABSOLUTELY NO WARRANTY from Data
@@ -3035,7 +3035,7 @@ meta = [
   "config": processConfig(readJsonBlob('''{
   "name" : "split_modalities",
   "namespace" : "workflows/multiomics",
-  "version" : "v3.0.0",
+  "version" : "3.0.0",
   "authors" : [
     {
       "name" : "Dries Schaumont",
@@ -3274,9 +3274,9 @@ meta = [
     "engine" : "native",
     "output" : "/home/runner/work/openpipeline/openpipeline/target/_private/nextflow/workflows/multiomics/split_modalities",
     "viash_version" : "0.9.4",
-    "git_commit" : "03132f98cca92079ce154fc0bfdd51db05cd3350",
+    "git_commit" : "706b5ce24d313dcf947b7d9fe929630f1ad204e7",
     "git_remote" : "https://github.com/openpipelines-bio/openpipeline",
-    "git_tag" : "2.1.0-1-g03132f98cca"
+    "git_tag" : "2.1.0-2-g706b5ce24d3"
   },
   "package_config" : {
     "name" : "openpipeline",
@@ -3302,7 +3302,7 @@ meta = [
     "target" : "/home/runner/work/openpipeline/openpipeline/target",
     "config_mods" : [
       ".resources += {path: '/src/workflows/utils/labels.config', dest: 'nextflow_labels.config'}\n.runners[.type == 'nextflow'].config.script := 'includeConfig(\\"nextflow_labels.config\\")'",
-      ".version := \\"v3.0.0\\""
+      ".version := \\"3.0.0\\""
     ],
     "keywords" : [
       "single-cell",