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‎src/tiledb/move_mudata_obsm_to_tiledb/config.vsh.yaml‎

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@@ -55,10 +55,8 @@ resources:
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test_resources:
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- type: python_script
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path: test.py
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- path: /resources_test/tiledb/pbmc_1k_protein_v3_mms
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dest: tiledb/pbmc_1k_protein_v3_mms
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- path: /resources_test/pbmc_1k_protein_v3/pbmc_1k_protein_v3_mms.h5mu
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dest: pbmc_1k_protein_v3/pbmc_1k_protein_v3_mms.h5mu
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- path: /resources_test/tiledb/
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- path: /resources_test/pbmc_1k_protein_v3/
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engines:
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- type: docker
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image: python:3.12

‎target/_private/executable/tiledb/move_mudata_obsm_to_tiledb/.config.vsh.yaml‎

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@@ -103,11 +103,9 @@ test_resources:
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path: "test.py"
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is_executable: true
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- type: "file"
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path: "tiledb/pbmc_1k_protein_v3_mms"
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dest: "tiledb/pbmc_1k_protein_v3_mms"
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path: "tiledb"
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- type: "file"
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path: "pbmc_1k_protein_v3/pbmc_1k_protein_v3_mms.h5mu"
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dest: "pbmc_1k_protein_v3/pbmc_1k_protein_v3_mms.h5mu"
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path: "pbmc_1k_protein_v3"
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info: null
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status: "enabled"
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scope:
@@ -236,9 +234,9 @@ build_info:
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output: "target/_private/executable/tiledb/move_mudata_obsm_to_tiledb"
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executable: "target/_private/executable/tiledb/move_mudata_obsm_to_tiledb/move_mudata_obsm_to_tiledb"
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viash_version: "0.9.4"
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git_commit: "b79935a0200a2de4195bfcaa63b1ccbd290c150b"
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git_commit: "03132f98cca92079ce154fc0bfdd51db05cd3350"
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git_remote: "https://github.com/openpipelines-bio/openpipeline"
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git_tag: "2.1.0"
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git_tag: "2.1.0-1-g03132f98cca"
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package_config:
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name: "openpipeline"
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summary: "Best-practice workflows for single-cell multi-omics analyses.\n"

‎target/_private/executable/tiledb/move_mudata_obsm_to_tiledb/move_mudata_obsm_to_tiledb‎

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@@ -454,9 +454,9 @@ RUN pip install --upgrade pip && \
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LABEL org.opencontainers.image.authors="Dries Schaumont"
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LABEL org.opencontainers.image.description="Companion container for running component tiledb move_mudata_obsm_to_tiledb"
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LABEL org.opencontainers.image.created="2025-08-22T14:12:23Z"
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LABEL org.opencontainers.image.created="2025-08-22T15:37:11Z"
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LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
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LABEL org.opencontainers.image.revision="b79935a0200a2de4195bfcaa63b1ccbd290c150b"
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LABEL org.opencontainers.image.revision="03132f98cca92079ce154fc0bfdd51db05cd3350"
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LABEL org.opencontainers.image.version="v3.0.0"
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VIASHDOCKER

‎target/_private/nextflow/tiledb/move_mudata_obsm_to_tiledb/.config.vsh.yaml‎

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@@ -103,11 +103,9 @@ test_resources:
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path: "test.py"
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is_executable: true
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- type: "file"
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path: "tiledb/pbmc_1k_protein_v3_mms"
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dest: "tiledb/pbmc_1k_protein_v3_mms"
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path: "tiledb"
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- type: "file"
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path: "pbmc_1k_protein_v3/pbmc_1k_protein_v3_mms.h5mu"
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dest: "pbmc_1k_protein_v3/pbmc_1k_protein_v3_mms.h5mu"
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path: "pbmc_1k_protein_v3"
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info: null
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status: "enabled"
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scope:
@@ -236,9 +234,9 @@ build_info:
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output: "target/_private/nextflow/tiledb/move_mudata_obsm_to_tiledb"
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executable: "target/_private/nextflow/tiledb/move_mudata_obsm_to_tiledb/main.nf"
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viash_version: "0.9.4"
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git_commit: "b79935a0200a2de4195bfcaa63b1ccbd290c150b"
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git_commit: "03132f98cca92079ce154fc0bfdd51db05cd3350"
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git_remote: "https://github.com/openpipelines-bio/openpipeline"
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git_tag: "2.1.0"
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git_tag: "2.1.0-1-g03132f98cca"
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package_config:
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name: "openpipeline"
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summary: "Best-practice workflows for single-cell multi-omics analyses.\n"

‎target/_private/nextflow/tiledb/move_mudata_obsm_to_tiledb/main.nf‎

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@@ -3167,13 +3167,11 @@ meta = [
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},
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{
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"type" : "file",
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"path" : "/resources_test/tiledb/pbmc_1k_protein_v3_mms",
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"dest" : "tiledb/pbmc_1k_protein_v3_mms"
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"path" : "/resources_test/tiledb/"
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},
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{
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"type" : "file",
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"path" : "/resources_test/pbmc_1k_protein_v3/pbmc_1k_protein_v3_mms.h5mu",
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"dest" : "pbmc_1k_protein_v3/pbmc_1k_protein_v3_mms.h5mu"
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"path" : "/resources_test/pbmc_1k_protein_v3/"
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}
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],
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"status" : "enabled",
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"engine" : "docker",
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"output" : "/home/runner/work/openpipeline/openpipeline/target/_private/nextflow/tiledb/move_mudata_obsm_to_tiledb",
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"viash_version" : "0.9.4",
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"git_commit" : "b79935a0200a2de4195bfcaa63b1ccbd290c150b",
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"git_commit" : "03132f98cca92079ce154fc0bfdd51db05cd3350",
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"git_remote" : "https://github.com/openpipelines-bio/openpipeline",
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"git_tag" : "2.1.0"
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"git_tag" : "2.1.0-1-g03132f98cca"
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},
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"package_config" : {
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"name" : "openpipeline",

‎target/_private/nextflow/workflows/multiomics/split_h5mu/.config.vsh.yaml‎

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@@ -209,9 +209,9 @@ build_info:
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output: "target/_private/nextflow/workflows/multiomics/split_h5mu"
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executable: "target/_private/nextflow/workflows/multiomics/split_h5mu/main.nf"
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viash_version: "0.9.4"
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git_commit: "b79935a0200a2de4195bfcaa63b1ccbd290c150b"
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git_commit: "03132f98cca92079ce154fc0bfdd51db05cd3350"
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git_remote: "https://github.com/openpipelines-bio/openpipeline"
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git_tag: "2.1.0"
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git_tag: "2.1.0-1-g03132f98cca"
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dependencies:
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- "target/nextflow/dataflow/split_h5mu"
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package_config:

‎target/_private/nextflow/workflows/multiomics/split_h5mu/main.nf‎

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@@ -3305,9 +3305,9 @@ meta = [
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"engine" : "native",
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"output" : "/home/runner/work/openpipeline/openpipeline/target/_private/nextflow/workflows/multiomics/split_h5mu",
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"viash_version" : "0.9.4",
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"git_commit" : "b79935a0200a2de4195bfcaa63b1ccbd290c150b",
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"git_commit" : "03132f98cca92079ce154fc0bfdd51db05cd3350",
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"git_remote" : "https://github.com/openpipelines-bio/openpipeline",
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"git_tag" : "2.1.0"
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"git_tag" : "2.1.0-1-g03132f98cca"
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},
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"package_config" : {
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"name" : "openpipeline",

‎target/_private/nextflow/workflows/multiomics/split_modalities/.config.vsh.yaml‎

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output: "target/_private/nextflow/workflows/multiomics/split_modalities"
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executable: "target/_private/nextflow/workflows/multiomics/split_modalities/main.nf"
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viash_version: "0.9.4"
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git_commit: "b79935a0200a2de4195bfcaa63b1ccbd290c150b"
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git_commit: "03132f98cca92079ce154fc0bfdd51db05cd3350"
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git_remote: "https://github.com/openpipelines-bio/openpipeline"
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git_tag: "2.1.0"
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git_tag: "2.1.0-1-g03132f98cca"
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dependencies:
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- "target/nextflow/dataflow/split_modalities"
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package_config:

‎target/_private/nextflow/workflows/multiomics/split_modalities/main.nf‎

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@@ -3274,9 +3274,9 @@ meta = [
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"engine" : "native",
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"output" : "/home/runner/work/openpipeline/openpipeline/target/_private/nextflow/workflows/multiomics/split_modalities",
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"viash_version" : "0.9.4",
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"git_commit" : "b79935a0200a2de4195bfcaa63b1ccbd290c150b",
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"git_commit" : "03132f98cca92079ce154fc0bfdd51db05cd3350",
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"git_remote" : "https://github.com/openpipelines-bio/openpipeline",
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"git_tag" : "2.1.0"
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"git_tag" : "2.1.0-1-g03132f98cca"
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},
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"package_config" : {
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"name" : "openpipeline",

‎target/executable/annotate/celltypist/.config.vsh.yaml‎

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@@ -419,9 +419,9 @@ build_info:
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output: "target/executable/annotate/celltypist"
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executable: "target/executable/annotate/celltypist/celltypist"
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viash_version: "0.9.4"
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git_commit: "b79935a0200a2de4195bfcaa63b1ccbd290c150b"
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git_commit: "03132f98cca92079ce154fc0bfdd51db05cd3350"
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git_remote: "https://github.com/openpipelines-bio/openpipeline"
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git_tag: "2.1.0"
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git_tag: "2.1.0-1-g03132f98cca"
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package_config:
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name: "openpipeline"
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summary: "Best-practice workflows for single-cell multi-omics analyses.\n"

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