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@ohsu-comp-bio

Oregon Health and Science University Computational Biology

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  1. funnel Public

    Funnel is a toolkit for distributed task execution via a simple, standard API.

    Go 124 34

  2. tesseract Public

    Python lib for remote code execution via the GA4GH TES API

    Python 7

  3. g2p-aggregator Public

    Associations of genomic features, drugs and diseases

    HTML 48 11

Repositories

Showing 10 of 202 repositories
  • funnel Public

    Funnel is a toolkit for distributed task execution via a simple, standard API.

    Go 124 MIT 34 118 (1 issue needs help) 2 Updated Mar 28, 2025
  • compbio-galaxy-wrappers Public

    OHSU Galaxy wrappers.

    Python 6 11 0 3 Updated Mar 27, 2025
  • caliper-design Public

    Design docs for the CALIPER components and tools ⚙️

    1 Apache-2.0 1 6 1 Updated Mar 26, 2025
  • helm-charts Public

    Helm Charts for deploying various projects in Kubernetes!

    1 0 0 0 Updated Mar 26, 2025
  • funnel-plugins Public

    Golang Plugin development + testing using Hashicorp go-plugin package

    Go 1 Apache-2.0 0 0 0 Updated Mar 25, 2025
  • py-tes Public

    Python SDK for the GA4GH Task Execution API

    Python 5 MIT 11 19 1 Updated Feb 25, 2025
  • pycascades Public

    PyCascdes 2025 Demo

    Python 2 Apache-2.0 0 0 0 Updated Feb 9, 2025
  • example-repo Public

    Test Repo!

    HTML 0 Apache-2.0 0 0 0 Updated Jan 31, 2025
  • HTAN-FHIR Public

    python scripts to transform HTAN metadata to FHIR

    Python 0 0 0 0 Updated Jan 14, 2025
  • fence-multipart Public Forked from uc-cdis/fence

    AuthN/AuthZ OIDC Service

    Python 0 Apache-2.0 48 0 0 Updated Dec 9, 2024
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Most used topics

ga4gh cwl protobuf