These files are from my analyses as a 2024 SURFO fellow in Hongjie Wang's Ocean Carbon Lab at the University of Rhode Island Graduate School of Oceanography. The code in the Oyster_Farm.R file is used for writing monthly Oyster Farm Water Chemistry Reports which are shared with farmers and funding agencies. The code in CO2SYS_Analysis.R is used for the carbonate system chemistry that I conducted as a part of my fellowship. It contains a few approaches to calculate carbonate chemistry as well as CO2 flux, however the CO2 flux is partially calcuated in Matlab so at present there is a lot of swapping between R and Matlab during these analyses. I am hoping to convert some of these matlab scripts into R so they can be used in R as well so we do not have to switch programming languages, and to make an accessible package for future use.

Additionally, my analyses and data visualization codes used for my AGU presentation are included in this repository.

The authors of each script are listed in the comments at the top of each script.

I am still an undergrad and not a programmer, so any feedback is welcome to make my work more efficient and accurate!

I am reachable at ijacobs@bu.edu for any questions or comments.