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@@ -35,18 +35,18 @@ Additionally, the following raw and processed data is /will be made available on | |
| Links to mouse data: | ||
| - Short read Illumina reads [fastqs](https://data.nemoarchive.org/biccn/grant/rf1_tilgner/tilgner/transcriptome/scell/10x_v3/mouse/raw/) | ||
| - Cellranger output files [mtx, tsv](https://data.nemoarchive.org/biccn/grant/rf1_tilgner/tilgner/transcriptome/scell/10x_v3/mouse/processed/counts/), | ||
| - Raw long-read sequencing data sequenced on (PacBio)[https://data.nemoarchive.org/biccn/grant/rf1_tilgner/tilgner/transcriptome/scell/pacbio/mouse/raw/] and (ONT)[https://data.nemoarchive.org/biccn/grant/rf1_tilgner/tilgner/transcriptome/scell/oxford_nanopore/mouse/raw/] | ||
| - AllInfo files per processed (ONT)[https://data.nemoarchive.org/biccn/grant/rf1_tilgner/tilgner/transcriptome/scell/oxford_nanopore/mouse/processed/other/] long read containing | ||
| - Raw long-read sequencing data sequenced on [PacBio](https://data.nemoarchive.org/biccn/grant/rf1_tilgner/tilgner/transcriptome/scell/pacbio/mouse/raw/) and [ONT](https://data.nemoarchive.org/biccn/grant/rf1_tilgner/tilgner/transcriptome/scell/oxford_nanopore/mouse/raw/) | ||
| - AllInfo files per processed [ONT](https://data.nemoarchive.org/biccn/grant/rf1_tilgner/tilgner/transcriptome/scell/oxford_nanopore/mouse/processed/other/) long read containing | ||
| - cell barcode | ||
| - assigned cell type | ||
| - UMI | ||
| - intron chain | ||
| - TSS assignment | ||
| - PolyA site assignment | ||
| - exon chain | ||
| - BED12 files per processed (ONT)[https://data.nemoarchive.org/biccn/grant/rf1_tilgner/tilgner/transcriptome/scell/oxford_nanopore/mouse/processed/other/] long read | ||
| - BED12 files per processed [ONT](https://data.nemoarchive.org/biccn/grant/rf1_tilgner/tilgner/transcriptome/scell/oxford_nanopore/mouse/processed/other/) long read | ||
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| We additionally have data from 6 human hippocampal samples available through the (NeMO)[https://data.nemoarchive.org/biccn/grant/rf1_tilgner/tilgner/transcriptome/sncell/] | ||
| We additionally have data from 6 human hippocampal samples available through the [NeMO](https://data.nemoarchive.org/biccn/grant/rf1_tilgner/tilgner/transcriptome/sncell/) | ||
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| If you have questions, please do not hesitate to open an issue or reach out over email to [me](mailto:[email protected]) | ||
| or the corresponding author. | ||