change jsdgam example

nicholasjclark · Nov 1, 2024 · fcbb3eb · fcbb3eb
1 parent fd8b1cf
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diff --git a/R/jsdgam.R b/R/jsdgam.R
@@ -156,7 +156,6 @@
 #' ggplot(dat, aes(x = lat, y = lon, col = log(count + 1))) +
 #'   geom_point(size = 2.25) +
 #'   facet_wrap(~ species, scales = 'free') +
-#'   viridis::scale_color_viridis() +
 #'   theme_classic()
 #'
 #' # Inspect default priors for the underlying model
@@ -226,11 +225,7 @@
 #' cormat <- cov2cor(tcrossprod(med_loadings))
 #' rownames(cormat) <- colnames(cormat) <- levels(dat$species)
 #'
-#' # Plot it using corrplot (if installed)
-#' if(requireNamespace('corrplot', quietly = TRUE)){
-#'   corrplot::corrplot(cormat, type = 'lower', tl.col = 'black',
-#'                      tl.srt = 45)
-#' }
+#' round(cormat, 2)
 #'
 #' # Posterior predictive checks and ELPD-LOO can ascertain model fit
 #' pp_check(mod, type = "ecdf_overlay_grouped",
@@ -255,7 +250,6 @@
 #' ggplot(newdata, aes(x = lat, y = lon, col = log_count)) +
 #'   geom_point(size = 1.5) +
 #'   facet_wrap(~ species, scales = 'free') +
-#'   viridis::scale_color_viridis() +
 #'   theme_classic()
 #'}
 #'@export

diff --git a/docs/reference/index.html b/docs/reference/index.html
diff --git a/docs/reference/jsdgam-2.png b/docs/reference/jsdgam-2.png
diff --git a/docs/reference/jsdgam-7.png b/docs/reference/jsdgam-7.png
diff --git a/docs/reference/jsdgam-8.png b/docs/reference/jsdgam-8.png
diff --git a/docs/reference/jsdgam.html b/docs/reference/jsdgam.html
diff --git a/man/jsdgam.Rd b/man/jsdgam.Rd