wip fixing tests

Author: KateSakharova

modules/local/generate_assembly_manifest/tests/main.nf.test

@@ -20,6 +20,7 @@ nextflow_process {
                 input[1] = "PRJ12345"
                 input[2] = false
                 input[3] = true
+                input[4] = false
                 """
 
             }
@@ -66,6 +67,7 @@ nextflow_process {
                 input[1] = "PRJ12345"
                 input[2] = false
                 input[3] = true
+                input[4] = false
                 """
             }
         }

modules/local/registerstudy/tests/main.nf.test

@@ -17,6 +17,7 @@ nextflow_process {
                     file(params.pipelines_testdata_base_path + 'test_data/study_metadata/study_metadata.json', checkIfExists: true)
                 ]
                 input[1] = true
+                input[2] = false
                 """
             }
         }
@@ -41,6 +42,7 @@ nextflow_process {
                     file(params.pipelines_testdata_base_path + 'test_data/study_metadata/study_metadata.tsv', checkIfExists: true)
                 ]
                 input[1] = true
+                input[2] = false
                 """
             }
         }
@@ -66,6 +68,7 @@ nextflow_process {
                     file(params.pipelines_testdata_base_path + 'test_data/study_metadata/study_metadata.json', checkIfExists: true)
                 ]
                 input[1] = true
+                input[2] = false
                 """
             }
         }