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First release updates#77

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RaqManzano merged 103 commits into
devfrom
first-release
Jun 23, 2026
Merged

First release updates#77
RaqManzano merged 103 commits into
devfrom
first-release

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@RaqManzano

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Changes added after comments from first release discussion

@nf-core-bot

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Warning

Newer version of the nf-core template is available.

Your pipeline is using an old version of the nf-core template: 3.5.1.
Please update your pipeline to the latest version.

For more documentation on how to update your pipeline, please see the nf-core documentation and Synchronisation documentation.

@maxulysse

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CI failure is my bad, but fixing it right now

Comment thread conf/test.config
// Input data
// I/O opts
input = "${projectDir}/tests/csv/3.0/fastq_triplet.csv"
outdir = "rnadnavar_test"

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Suggested change
outdir = "rnadnavar_test"

let's not hardcode that here, but only set it up in the tests

@maxulysse maxulysse left a comment

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just a minor suggestion

@RaqManzano RaqManzano merged commit 4c65b47 into dev Jun 23, 2026
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Remove caller from meta in the consensus step Skipping realignment fails

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