[DO NOT MERGE] - Core pipeline review#65
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This reverts commit 524e0f0b75f7832aa4ec1fa5b5ab1dd7efe2397f.
…ow and sage prettier
SPPearce
reviewed
Jun 23, 2026
Address review comments for first release
…e able to start from just filtering
First release last comments about maf_rna_filtering and I added some nf-tests for filtering and consensus
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I created this against the latest commit in the template branch that I put in a separate branch (
template_3.5.1).PR checklist
nf-core pipelines lint).nextflow run . -profile test,docker --outdir <OUTDIR>).nextflow run . -profile debug,test,docker --outdir <OUTDIR>).docs/usage.mdis updated.docs/output.mdis updated.CHANGELOG.mdis updated.README.mdis updated (including new tool citations and authors/contributors).