feat: cross-sample ORF catalogue#187

Merged

pinin4fjords merged 19 commits into

devfrom

feat/167-orf-catalogue

Jun 26, 2026

Commits on May 22, 2026

Commits on Jun 25, 2026

Merge branch 'dev' into feat/167-orf-catalogue

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feat: ORF catalogue consensus threshold and smORF-collapse opt-out

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docs(orfcollapse): correct GENCODE-equivalence framing

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test(orfmerge): cover the consensus threshold view

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test: regenerate catalogue pipeline snapshots

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docs(changelog): trim modernisation entries to one-liners

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chore(modules): align orfmerge + orftable subworkflow with upstream consensus-view code [skip ci]

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chore(modules): sync orftable subworkflow snapshot (.catalogue.aa) with upstream [skip ci]

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feat: publish the post-collapse ORF consensus view

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test: regenerate catalogue snapshots for the post-collapse consensus

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chore(modules): re-pin orf catalogue components to the nf-core/modules #12167 merge

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docs: consensus view is filtered after the smORF collapse

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