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- #10 · edmundmiller opened
on Feb 8, 2024
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HISAT2_EXTRACTSPLICESITESwhen hisat2_extractsplicesites not specifiedbugSomething isn't workingSomething isn't workingStatus: Open.#130 In nf-core/references;Add species-specific parameters for splice-aware index generation (e.g., average exon length, sjdbOverhang)
enhancementNew feature or requestNew feature or requestStatus: Open.#129 In nf-core/references;Add support for CHM13 Panel of normals
enhancementNew feature or requestNew feature or requestStatus: Open.#126 In nf-core/references;Add support for
snap-alignerindex generationenhancementNew feature or requestNew feature or requestStatus: Open.#116 In nf-core/references;JSON schema: References
documentationImprovements or additions to documentationImprovements or additions to documentationStatus: Open.Move annotation-cache in references
enhancementNew feature or requestNew feature or requestStatus: Open.Improve utils suborkflow usage
enhancementNew feature or requestNew feature or requestStatus: Open.Auto-generate params.yml for backwards compatibility for old rnaseq versions
enhancementNew feature or requestNew feature or requestStatus: Open.Figure out how to deal with a variable base_path
enhancementNew feature or requestNew feature or requestStatus: Open.Enhance schema to handle multiple files
enhancementNew feature or requestNew feature or requestStatus: Open.Add to schema all items from rnaseq
enhancementNew feature or requestNew feature or requestStatus: Open.Pipelines to support - 1.1.0
enhancementNew feature or requestNew feature or requestStatus: Open.