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1.1.1 - LATÜRNICH #186

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merged 26 commits into from
Mar 15, 2024
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7b0d784
bump pipeline version to 1.2.0dev - LATÜRNICH
subwaystation Feb 28, 2024
54af90f
Merge pull request #181 from subwaystation/prepare_120
subwaystation Feb 28, 2024
cf1a29b
Template update for nf-core/tools version 2.13.1
nf-core-bot Feb 29, 2024
a68f506
fix wfmash v0.12.6 parameters
subwaystation Mar 6, 2024
355329f
give smoothxg more threads in hla.config
subwaystation Mar 6, 2024
b9ffbeb
revert vg version back to 1.40 and update vg deconstruct code
subwaystation Mar 6, 2024
853c2f3
Merge branch 'dev' into nf-core-template-merge-2.13.1
subwaystation Mar 6, 2024
244a445
merge template update 2.13.1
subwaystation Mar 6, 2024
0f69e5d
Merge branch 'dev' into nf-core-template-merge-2.13.1
subwaystation Mar 6, 2024
fae571a
Update nextflow.config
subwaystation Mar 6, 2024
9250435
Update nextflow.config
subwaystation Mar 6, 2024
2c3e231
Merge pull request #182 from nf-core/nf-core-template-merge-2.13.1
subwaystation Mar 6, 2024
5adbc20
Merge branch 'dev' into wfmash_0.12.6_parameters
subwaystation Mar 6, 2024
7ebd370
Merge pull request #183 from nf-core/wfmash_0.12.6_parameters
subwaystation Mar 6, 2024
d8f2aa7
bump bcftools to 1.19
subwaystation Mar 13, 2024
f6f86fd
Merge pull request #184 from nf-core/bcftools_1.19
subwaystation Mar 13, 2024
19ecf00
prepare 1.1.1 release
subwaystation Mar 14, 2024
c42285b
Merge pull request #185 from subwaystation/dev
subwaystation Mar 14, 2024
fe7d639
reflect vcf_spec changes also in the schema
subwaystation Mar 14, 2024
0ee3458
Update CHANGELOG.md
subwaystation Mar 14, 2024
b2cb539
Update nextflow_schema.json
subwaystation Mar 14, 2024
b9434e3
remove warning as suggested by review
subwaystation Mar 14, 2024
c19f69a
Update nextflow_schema.json
subwaystation Mar 14, 2024
3071e95
Update .github/workflows/linting.yml
subwaystation Mar 14, 2024
57aa173
revert liniting.yml review suggestion
subwaystation Mar 14, 2024
5daf69e
Update .github/workflows/download_pipeline.yml
subwaystation Mar 14, 2024
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2 changes: 2 additions & 0 deletions CHANGELOG.md
Original file line number Diff line number Diff line change
@@ -2,6 +2,8 @@

The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/) and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).

## 1.2.0dev - LATÜRNICH

## 1.1.0 - Schmuddlweddr

This release mostly contains updates of the respective modules. Functional updates are the following:
4 changes: 2 additions & 2 deletions assets/multiqc_config.yml
Original file line number Diff line number Diff line change
@@ -1,7 +1,7 @@
report_comment: >
This report has been generated by the <a href="https://github.com/nf-core/pangenome/releases/tag/1.1.0" target="_blank">nf-core/pangenome</a>
This report has been generated by the <a href="https://github.com/nf-core/pangenome/tree/dev" target="_blank">nf-core/pangenome</a>
analysis pipeline. For information about how to interpret these results, please see the
<a href="https://nf-co.re/pangenome/1.1.0/docs/output" target="_blank">documentation</a>.
<a href="https://nf-co.re/pangenome/dev/docs/output" target="_blank">documentation</a>.
report_section_order:
"nf-core-pangenome-methods-description":
order: -1000
2 changes: 1 addition & 1 deletion nextflow.config
Original file line number Diff line number Diff line change
@@ -276,7 +276,7 @@ manifest {
description = """The pangenome graph construction pipeline renders a collection of sequences into a pangenome graph. Its goal is to build a graph that is locally directed and acyclic while preserving large-scale variation. Maintaining local linearity is important for interpretation, visualization, mapping, comparative genomics, and reuse of pangenome graphs"""
mainScript = 'main.nf'
nextflowVersion = '!>=23.04.0'
version = '1.1.0'
version = '1.2.0dev'
doi = 'https://doi.org/10.5281/zenodo.8202636'
}