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Important! Template update for nf-core/tools v2.12 #473

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Important! Template update for nf-core/tools v2.12

Important! Template update for nf-core/tools v2.12 #473

Triggered via pull request January 29, 2024 15:54
@subwaystationsubwaystation
synchronize #163
nf-core-template-merge-2.12
Status Cancelled
Total duration 3m 46s
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ci.yml

on: pull_request
Matrix: Run pipeline with community parameters
Matrix: Run pipeline with metric parameter suffixes
Matrix: Run pipeline with smoothxg parameters
Matrix: Run pipeline with test data
Matrix: Run pipeline with vg deconstruct parameters
Matrix: Run pipeline with wfmash_chunks parameters
Matrix: Run pipeline with wfmash_only parameters
Matrix: Run pipeline with wfmash_sparse_map parameters
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1 error and 13 warnings
Run pipeline with community parameters (--communities --vcf_spec "gi|568815561:#,gi|568815567:#")
The operation was canceled.
Run pipeline with wfmash_only parameters (--wfmash_only)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run pipeline with wfmash_sparse_map parameters (--wfmash_sparse_map auto)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run pipeline with wfmash_sparse_map parameters (--wfmash_sparse_map 0.5)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run pipeline with test data (23.04.0)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run pipeline with smoothxg parameters (--smoothxg_write_maf --smoothxg_poa_length 100,200,300 --s...
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run pipeline with metric parameter suffixes (--wfmash_sequence_length 8k --wfmash_block_length 38...
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run pipeline with smoothxg parameters (--smoothxg_poa_params asm10)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run pipeline with test data (latest-everything)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run pipeline with wfmash_chunks parameters (--wfmash_chunks 2)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run pipeline with community parameters (--communities --wfmash_chunks 2)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run pipeline with community parameters (--communities)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run pipeline with vg deconstruct parameters (--vcf_spec "gi|568815561:#,gi|568815567:#")
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Run pipeline with community parameters (--communities --vcf_spec "gi|568815561:#,gi|568815567:#")
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.