Fix 1.1.3 release lint error(s) #657
Triggered via pull request
January 30, 2025 22:31
heuermh
Status
Cancelled
Total duration
1m 51s
Artifacts
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ci.yml
on: pull_request
Matrix: Run pipeline with community parameters
Matrix: Run pipeline with metric parameter suffixes
Matrix: Run pipeline with smoothxg parameters
Matrix: test
Matrix: Run pipeline with vg deconstruct parameters
Matrix: Run pipeline with wfmash_chunks parameters
Matrix: Run pipeline with wfmash_only parameters
Matrix: Run pipeline with wfmash_sparse_map parameters
Annotations
26 errors and 2 warnings
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Run pipeline with test data (latest-everything | test | conda)
Canceling since a higher priority waiting request for 'nf-core CI-239' exists
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Run pipeline with test data (24.04.2 | test | singularity)
Canceling since a higher priority waiting request for 'nf-core CI-239' exists
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Run pipeline with test data (24.04.2 | test | conda)
Canceling since a higher priority waiting request for 'nf-core CI-239' exists
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Run pipeline with community parameters (--communities --wfmash_chunks 2)
Canceling since a higher priority waiting request for 'nf-core CI-239' exists
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Run pipeline with community parameters (--communities --wfmash_chunks 2)
The operation was canceled.
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Run pipeline with test data (latest-everything | test | singularity)
Canceling since a higher priority waiting request for 'nf-core CI-239' exists
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Run pipeline with test data (latest-everything | test | docker)
Canceling since a higher priority waiting request for 'nf-core CI-239' exists
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Run pipeline with vg deconstruct parameters (--vcf_spec "gi|568815561:5,gi|568815567:25")
Canceling since a higher priority waiting request for 'nf-core CI-239' exists
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Run pipeline with vg deconstruct parameters (--vcf_spec "gi|568815561:5,gi|568815567:25")
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Run pipeline with wfmash_chunks parameters (--wfmash_chunks 2)
Canceling since a higher priority waiting request for 'nf-core CI-239' exists
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Run pipeline with wfmash_chunks parameters (--wfmash_chunks 2)
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Run pipeline with community parameters (--communities)
Canceling since a higher priority waiting request for 'nf-core CI-239' exists
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Run pipeline with community parameters (--communities)
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Run pipeline with wfmash_sparse_map parameters (--wfmash_sparse_map auto)
Canceling since a higher priority waiting request for 'nf-core CI-239' exists
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Run pipeline with wfmash_sparse_map parameters (--wfmash_sparse_map auto)
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Run pipeline with test data (24.04.2 | test | docker)
Canceling since a higher priority waiting request for 'nf-core CI-239' exists
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Run pipeline with smoothxg parameters (--smoothxg_write_maf --smoothxg_poa_length 100,200,300 --s...
Canceling since a higher priority waiting request for 'nf-core CI-239' exists
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Run pipeline with smoothxg parameters (--smoothxg_write_maf --smoothxg_poa_length 100,200,300 --s...
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Run pipeline with smoothxg parameters (--smoothxg_poa_params asm10)
Canceling since a higher priority waiting request for 'nf-core CI-239' exists
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Run pipeline with smoothxg parameters (--smoothxg_poa_params asm10)
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Run pipeline with metric parameter suffixes (--wfmash_sequence_length 8k --wfmash_block_length 38...
Canceling since a higher priority waiting request for 'nf-core CI-239' exists
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Run pipeline with metric parameter suffixes (--wfmash_sequence_length 8k --wfmash_block_length 38...
The operation was canceled.
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Run pipeline with wfmash_sparse_map parameters (--wfmash_sparse_map 0.5)
Canceling since a higher priority waiting request for 'nf-core CI-239' exists
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Run pipeline with wfmash_sparse_map parameters (--wfmash_sparse_map 0.5)
The operation was canceled.
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Run pipeline with community parameters (--communities --vcf_spec "gi|568815561:5,gi|568815567:25")
Canceling since a higher priority waiting request for 'nf-core CI-239' exists
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Run pipeline with community parameters (--communities --vcf_spec "gi|568815561:5,gi|568815567:25")
The operation was canceled.
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Run pipeline with test data (latest-everything | test | conda)
/home/runner/miniconda3/lib/python3.12/site-packages/conda/base/context.py:201: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
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Run pipeline with test data (24.04.2 | test | conda)
/home/runner/miniconda3/lib/python3.12/site-packages/conda/base/context.py:201: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
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