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vt: Update to use Seqera Containers and bump to version 0.57721 - #13212

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renatosantos98 merged 10 commits into
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renatosantos98:vt-update
Oct 27, 2026
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renatosantos98 merged 10 commits into
nf-core:masterfrom
renatosantos98:vt-update

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Bump version from 2015.11.10 to 0.57721 for ARM support.

Fixes #13203 #13204 and #13205

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This PR exceeds the recommended size of 1000 lines. Please make sure you are NOT addressing multiple issues with one PR. Note this PR might be rejected due to its size.

@renatosantos98 renatosantos98 changed the title vt: Update to use Seqera Containers and bump to version 0.57721 Update vt to use Seqera Containers and bump to version 0.57721 Oct 15, 2026
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renatosantos98 marked this pull request as draft October 15, 2026 12:41
Needed for `bgzip` since the dependency is no longer included in `vt` 0.57721
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Tests are failing due to a missing libcurl dependency on the bioconda recipe - will be fixed when bioconda/bioconda-recipes#70361 gets merged and the new build gets published

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renatosantos98 marked this pull request as ready for review October 26, 2026 23:03
@renatosantos98 renatosantos98 changed the title Update vt to use Seqera Containers and bump to version 0.57721 vt: Update to use Seqera Containers and bump to version 0.57721 Oct 26, 2026
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renatosantos98 marked this pull request as draft October 26, 2026 23:39
auto-merge was automatically disabled October 26, 2026 23:39

Pull request was converted to draft

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renatosantos98 marked this pull request as ready for review October 27, 2026 00:45
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renatosantos98 added this pull request to the merge queue Oct 27, 2026
Merged via the queue into nf-core:master with commit 381b86e Oct 27, 2026
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renatosantos98 deleted the vt-update branch October 27, 2026 01:00
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Update vt/normalize to use Seqera Containers Update vt/decomposeblocksub to use Seqera Containers Update vt/decompose to use Seqera Containers

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