Skip to content

fix: Strict syntax for CRG #1068

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
JoseEspinosa merged 3 commits into from
Apr 7, 2026
Merged

fix: Strict syntax for CRG #1068

Show file tree
Hide file tree
Changes from 2 commits
Commits
Show all changes
3 commits
Select commit Hold shift + click to select a range
faa1c7f
CRG
maxulysse Apr 7, 2026
be84c2a
Apply suggestions from code review
maxulysse Apr 7, 2026
02292fd
Apply suggestions from code review
maxulysse Apr 7, 2026
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
2 changes: 1 addition & 1 deletion conf/pipeline/deepmodeloptim/crg.config
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -15,7 +15,7 @@ profiles {
singularity {
enabled = true
envWhitelist = "CUDA_VISIBLE_DEVICES,NVIDIA_VISIBLE_DEVICES"
if (params.use_gpu) { singularity.runOptions = '--nv' }
runOptions = params.get('use_gpu', false) ? '--nv' : ''
Comment thread
maxulysse marked this conversation as resolved.
Outdated
pullTimeout = "60m"
}
}
Expand Down
2 changes: 1 addition & 1 deletion conf/pipeline/multiplesequencealign/crg.config
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -14,7 +14,7 @@ profiles {
singularity {
enabled = true
envWhitelist = "CUDA_VISIBLE_DEVICES,NVIDIA_VISIBLE_DEVICES"
if (params.use_gpu) { singularity.runOptions = '--nv' }
runOptions = params.get('use_gpu', false) ? '--nv' : ''
Comment thread
maxulysse marked this conversation as resolved.
Outdated
pullTimeout = "60m"
}
}
Expand Down
Loading