Fix empty jasmine file (#105)

* fix empty jasmine file * update changelog * fix pre-commit lint
nf-cmgg · Feb 10, 2025 · 0376891 · 0376891
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commit 0376891
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diff --git a/.github/workflows/build-docs.yml b/.github/workflows/build-docs.yml
@@ -58,7 +58,6 @@ jobs:
         if: ${{ github.head_ref || github.ref_name }} == 'master'
         run: |
           mike deploy --push --update-aliases ${{ steps.version.outputs.version }} latest
-  
 
       - name: Set default docs
         run: mike set-default --push latest
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -22,6 +22,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 ### `Fixed`
 
 1. Fail the pipeline when the sex determination failed. This will now prompt the user to add the sex to the samplesheet so the pipeline doesn't do any wrong assumptions
+2. Fixed the Jasmine module output VCFs being empty when no variants have been merged. This file now contains the header of one of the input VCFs
 
 ## v0.2.0 - [19 July 2024] - Mighty Manneken Pis
 

diff --git a/modules.json b/modules.json
@@ -81,9 +81,8 @@
                     },
                     "jasminesv": {
                         "branch": "master",
-                        "git_sha": "92bf2a8afa318a64f9d333cf87b510c662fd4274",
-                        "installed_by": ["modules"],
-                        "patch": "modules/nf-core/jasminesv/jasminesv.diff"
+                        "git_sha": "a33c6de0a147226454c4a52db710826f2d9fafbe",
+                        "installed_by": ["modules"]
                     },
                     "manta/convertinversion": {
                         "branch": "master",

diff --git a/modules/nf-core/jasminesv/environment.yml b/modules/nf-core/jasminesv/environment.yml
diff --git a/modules/nf-core/jasminesv/jasminesv.diff b/modules/nf-core/jasminesv/jasminesv.diff
diff --git a/modules/nf-core/jasminesv/main.nf b/modules/nf-core/jasminesv/main.nf
diff --git a/modules/nf-core/jasminesv/meta.yml b/modules/nf-core/jasminesv/meta.yml
diff --git a/modules/nf-core/jasminesv/tests/iris.config b/modules/nf-core/jasminesv/tests/iris.config