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Make it clearer where files will be generated #698

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Merged
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Nov 21, 2025
Merged

Make it clearer where files will be generated #698

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2ea4ae6
Make it clearer where files will be generated
mribeirodantas Nov 17, 2025
e5e142e
Fix numbers in headings
mribeirodantas Nov 18, 2025
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2 changes: 1 addition & 1 deletion docs/nf4_science/genomics/02_joint_calling.md
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Expand Up @@ -161,7 +161,7 @@ gatk HaplotypeCaller \
-ERC GVCF
```

Once this completes, you should have three files ending in `.g.vcf` in your work directory (one per sample) and their respective index files ending in `.g.vcf.idx`.
Once this completes, you should have three files ending in `.g.vcf` in your current directory (one per sample) and their respective index files ending in `.g.vcf.idx`.

### 0.3. Run joint genotyping

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