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[WIP] add extracting table info into a csv #174

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[WIP] add extracting table info into a csv

[WIP] add extracting table info into a csv #174

Workflow file for this run

.github/workflows/testing.yml at 4f1492f
name: "build"
on:
push:
branches:
- "main"
pull_request:
branches:
- "*"
jobs:
checks:
name: checks
runs-on: "ubuntu-latest"
steps:
- uses: actions/checkout@v2
- uses: actions/setup-python@v2
with:
python-version: "3.10"
- name: "install"
run: pip install .[dev]
- name: "mypy"
run: make test_mypy
- name: "flake8"
run: make test_flake8
run_tests:
name: ${{ matrix.os }} with Python ${{ matrix.python-version }}
runs-on: ${{ matrix.os }}
strategy:
matrix:
os: ["ubuntu-latest", "windows-latest", "macos-latest"]
python-version: ["3.7", "3.10"]
steps:
- uses: actions/checkout@v2
- uses: actions/setup-python@v2
with:
python-version: ${{ matrix.python-version }}
name: "setup python"
- name: "install"
run: pip install .[dev]
- name: "run tests"
run: make test_coverage
- uses: codecov/codecov-action@v2
if: success()
name: "upload coverage to CodeCov"
run_tests_ubuntu_old_dependencies:
name: "Ubuntu with Python 3.7 min dependencies"
runs-on: "ubuntu-latest"
steps:
- uses: actions/checkout@v2
- uses: actions/setup-python@v2
with:
python-version: "3.7"
name: "setup python"
- name: "install tox"
run: pip install tox
- name: "run tests"
run: tox -e py37-old
run_tests_with_nimare_installed:
name: "Ubuntu with Python 3.8 and NiMARE"
runs-on: "ubuntu-latest"
steps:
- uses: actions/checkout@v2
- uses: actions/setup-python@v2
with:
python-version: "3.8"
name: "setup python"
- name: "install tox"
run: pip install tox
- name: "run tests"
run: tox -e py38-nimare
run_test_plugin:
name: "Test plugin"
runs-on: "ubuntu-latest"
steps:
- uses: actions/checkout@v2
- uses: actions/setup-python@v2
with:
python-version: "3.10"
name: "setup python"
- name: "install tox"
run: pip install tox
- name: "run tests"
run: make test_plugin
run_compare_query_vs_pmcid_list:
name: "Compare query vs PMCID list"
runs-on: "ubuntu-latest"
steps:
- uses: actions/checkout@v2
- uses: actions/setup-python@v2
with:
python-version: "3.10"
name: "setup python"
- name: "install"
run: pip install .[dev]
- name: "run check"
run: make compare_query_vs_pmcid_list
build_doc:
name: "build documentation"
runs-on: "ubuntu-latest"
steps:
- uses: actions/checkout@v2
- uses: actions/setup-python@v2
with:
python-version: "3.10"
- name: "install"
run: pip install .[dev]
- name: "build"
run: make doc
- name: "store doc artifact"
uses: actions/upload-artifact@v2
with:
name: documentation
path: doc_build/pubget.html