Skip to content
Merged

OS #267

Show file tree
Hide file tree
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
4 changes: 3 additions & 1 deletion docs/data_conversion.md
Original file line number Diff line number Diff line change
Expand Up @@ -6,6 +6,7 @@ to only apply conversion where needed. Data files can be imported by drag-and-dr
the mzmine graphical user interface or using the _import MS data_ module.

**Supported raw data formats include:**

- Bruker Daltonics (.d and .tdf/tsf)
- Thermo Fisher (.raw)
- Waters (.raw folders)
Expand All @@ -18,7 +19,7 @@ the mzmine graphical user interface or using the _import MS data_ module.

!!! warning

Some vendor data formats are only supported on specific operating systems due to the limited
Some vendor data formats are **only supported** on specific **operating systems** due to the limited
support by their respective data access libraries. All data formats are supported on Windows
and many on Linux (see full [compatibility list here](system_requirements.md#compatibility)).
Many data formats are unsupported on macOS, requiring data conversion to open formats, usually
Expand All @@ -34,6 +35,7 @@ While our team is expanding the native data support for all major vendor formats
install MSConvert for some formats. This will grant direct access to these files and mzmine will
use MSConvert with some internal optimizations to load data files in the background. Formats that
currently require MSConvert for direct support include:

- Agilent (.d)
- Sciex (.wiff/.wiff2)
- Shimadzu (.lcd)
Expand Down
6 changes: 5 additions & 1 deletion docs/system_requirements.md
Original file line number Diff line number Diff line change
Expand Up @@ -32,7 +32,7 @@ permissions.
!!! Info
Processing speed scales with CPU cores/threads and speed of the SSD for temporary files. We
recommend setting the temporary files directory to a fast, secondary SSD in the mzmine
preferences (CTRL+P, **Project -> Preferences**). (see [](getting_started.md#set-user-preferences))
preferences (CTRL+P, **Project Preferences**). (see [](getting_started.md#set-user-preferences))

## Software requirements

Expand Down Expand Up @@ -76,17 +76,21 @@ Read more about data support and [data conversion](data_conversion.md).
Some libraries for the raw data support for vendor-specific formats are only available for Windows.

The Linux version **supports** raw data formats from:

- **Thermo**, **Bruker**, **Waters**

Data from other Vendors may need to be **converted** to the open .mzML format before, including:

- **Agilent**, **Sciex**, **Shimadzu**, **MOBILion**

### macOS

Some libraries for the raw data support for vendor-specific formats are only available for Windows and Linux.

The macOS version **supports** raw data formats from:

- Thermo

Data from other Vendors may need to be **converted** to the open .mzML format before, including:

- Agilent, Sciex, Shimadzu, MOBILion, Bruker, Waters