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ai4c-agent merged 1 commit into from
Oct 21, 2026
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📄 Regenerate pages, dashboard, and schema docs (2026-10-21) #15104

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595 changes: 588 additions & 7 deletions app/data.js
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29 changes: 29 additions & 0 deletions app/hpo_category_cache.json
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Original file line number Diff line number Diff line change
Expand Up @@ -961,6 +961,10 @@
"HP:0000533": [
"Eye"
],
"HP:0000534": [
"Head and Neck",
"Integument"
],
"HP:0000537": [
"Head and Neck"
],
Expand Down Expand Up @@ -3763,6 +3767,9 @@
"Immune",
"Respiratory"
],
"HP:0002101": [
"Respiratory"
],
"HP:0002102": [
"Respiratory"
],
Expand Down Expand Up @@ -7161,6 +7168,9 @@
"HP:0005344": [
"Cardiovascular"
],
"HP:0005345": [
"Cardiovascular"
],
"HP:0005347": [
"Respiratory"
],
Expand Down Expand Up @@ -10511,6 +10521,9 @@
"HP:0010864": [
"Nervous System"
],
"HP:0010865": [
"Nervous System"
],
"HP:0010866": [
"Digestive"
],
Expand Down Expand Up @@ -11068,6 +11081,12 @@
"Cardiovascular",
"Growth"
],
"HP:0011539": [
"Cardiovascular"
],
"HP:0011540": [
"Cardiovascular"
],
"HP:0011560": [
"Cardiovascular"
],
Expand All @@ -11080,6 +11099,9 @@
"HP:0011570": [
"Cardiovascular"
],
"HP:0011579": [
"Cardiovascular"
],
"HP:0011611": [
"Cardiovascular"
],
Expand Down Expand Up @@ -11165,6 +11187,10 @@
"HP:0011716": [
"Cardiovascular"
],
"HP:0011718": [
"Cardiovascular",
"Respiratory"
],
"HP:0011727": [
"Limbs",
"Musculoskeletal"
Expand Down Expand Up @@ -13056,6 +13082,9 @@
"HP:0025421": [
"Thoracic Cavity"
],
"HP:0025423": [
"Respiratory"
],
"HP:0025425": [
"Respiratory"
],
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96 changes: 48 additions & 48 deletions dashboard/capability_metrics.html
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Original file line number Diff line number Diff line change
Expand Up @@ -73,42 +73,42 @@ <h1>DISMECH Capability Metrics</h1>
Aggregate QA/QC metrics showing DISMECH coverage, evidence depth, ontology grounding,
mechanistic modeling, and treatment coverage.
</p>
<p class="meta">Generated: 2026-10-21 07:58 UTC</p>
<p class="meta">Generated: 2026-10-21 10:14 UTC</p>
</header>

<section class="summary-cards">

<div class="card">
<h3>Curated Entries</h3>
<div class="value">3,611</div>
<div class="value">3,617</div>
<p>Disorder YAML files analyzed</p>
</div>


<div class="card">
<h3>Evidence Items</h3>
<div class="value">259,838</div>
<div class="value">260,193</div>
<p>Cited evidence blocks</p>
</div>


<div class="card">
<h3>Ontology Terms</h3>
<div class="value">166,516</div>
<div class="value">166,721</div>
<p>Grounded descriptor terms</p>
</div>


<div class="card">
<h3>Pathophysiology Nodes</h3>
<div class="value">25,684</div>
<div class="value">25,716</div>
<p>Mechanism events</p>
</div>


<div class="card">
<h3>Causal Edges</h3>
<div class="value">52,834</div>
<div class="value">52,930</div>
<p>Downstream mechanism links</p>
</div>

Expand All @@ -122,14 +122,14 @@ <h3>Avg Weighted Compliance</h3>

<div class="card">
<h3>MONDO Exact Pages</h3>
<div class="value">3,526</div>
<div class="value">3,532</div>
<p>Human-disease descendants with exact DISMECH pages</p>
</div>


<div class="card">
<h3>MONDO Exact + Parent</h3>
<div class="value">11,396</div>
<div class="value">11,400</div>
<p>Terms represented by exact or ancestor pages</p>
</div>

Expand All @@ -139,17 +139,17 @@ <h3>MONDO Exact + Parent</h3>
<div class="panel">
<h2>Evidence Quality</h2>
<dl class="metric-list">
<div><dt>Unique evidence references</dt><dd>50,871</dd></div>
<div><dt>Average evidence items per entry</dt><dd>72.0</dd></div>
<div><dt>Unique evidence references</dt><dd>50,935</dd></div>
<div><dt>Average evidence items per entry</dt><dd>71.9</dd></div>
</dl>
<table>
<thead><tr><th>Evidence Source</th><th>Items</th></tr></thead>
<tbody><tr><td>HUMAN_CLINICAL</td><td>170,185</td></tr>
<tr><td>OTHER</td><td>35,935</td></tr>
<tr><td>IN_VITRO</td><td>23,140</td></tr>
<tr><td>MODEL_ORGANISM</td><td>22,165</td></tr>
<tbody><tr><td>HUMAN_CLINICAL</td><td>170,417</td></tr>
<tr><td>OTHER</td><td>35,952</td></tr>
<tr><td>IN_VITRO</td><td>23,165</td></tr>
<tr><td>MODEL_ORGANISM</td><td>22,244</td></tr>
<tr><td>UNSPECIFIED</td><td>7,212</td></tr>
<tr><td>COMPUTATIONAL</td><td>1,201</td></tr></tbody>
<tr><td>COMPUTATIONAL</td><td>1,203</td></tr></tbody>
</table>
</div>

Expand All @@ -163,17 +163,17 @@ <h2>Ontology Richness</h2>
</dl>
<table>
<thead><tr><th>Ontology Prefix</th><th>Terms</th></tr></thead>
<tbody><tr><td>HP</td><td>57,037</td></tr>
<tr><td>GO</td><td>24,838</td></tr>
<tr><td>NCIT</td><td>22,459</td></tr>
<tr><td>HGNC</td><td>19,632</td></tr>
<tr><td>CL</td><td>14,942</td></tr>
<tr><td>MONDO</td><td>9,765</td></tr>
<tr><td>UBERON</td><td>6,615</td></tr>
<tr><td>CHEBI</td><td>6,267</td></tr>
<tbody><tr><td>HP</td><td>57,137</td></tr>
<tr><td>GO</td><td>24,869</td></tr>
<tr><td>NCIT</td><td>22,476</td></tr>
<tr><td>HGNC</td><td>19,650</td></tr>
<tr><td>CL</td><td>14,954</td></tr>
<tr><td>MONDO</td><td>9,773</td></tr>
<tr><td>UBERON</td><td>6,628</td></tr>
<tr><td>CHEBI</td><td>6,272</td></tr>
<tr><td>NCBITAXON</td><td>2,845</td></tr>
<tr><td>LOINC</td><td>1,115</td></tr>
<tr><td>ECTO</td><td>634</td></tr>
<tr><td>ECTO</td><td>635</td></tr>
<tr><td>RO</td><td>126</td></tr>
<tr><td>ICD10CM</td><td>72</td></tr>
<tr><td>XCO</td><td>57</td></tr>
Expand All @@ -194,15 +194,15 @@ <h2>Mechanistic Depth</h2>
<div><dt>Average pathophysiology nodes per entry</dt><dd>7.1</dd></div>
<div><dt>Average causal edges per entry</dt><dd>14.6</dd></div>
<div><dt>Entries using mechanism modules</dt><dd>37.9%</dd></div>
<div><dt>Module-conforming nodes</dt><dd>3,756</dd></div>
<div><dt>Module-conforming nodes</dt><dd>3,760</dd></div>
</dl>
</div>

<div class="panel">
<h2>Treatment Coverage</h2>
<dl class="metric-list">
<div><dt>Total treatments</dt><dd>15,292</dd></div>
<div><dt>Entries with treatments</dt><dd>95.2%</dd></div>
<div><dt>Total treatments</dt><dd>15,300</dd></div>
<div><dt>Entries with treatments</dt><dd>95.1%</dd></div>
<div><dt>Total clinical trials</dt><dd>1,648</dd></div>
<div><dt>Entries with clinical trials</dt><dd>19.4%</dd></div>
</dl>
Expand All @@ -212,7 +212,7 @@ <h2>Treatment Coverage</h2>
<h2>Curation Velocity</h2>
<table>
<thead><tr><th>Month</th><th>Created</th><th>Updated</th></tr></thead>
<tbody><tr><td>2026-10</td><td>316</td><td>17</td></tr>
<tbody><tr><td>2026-10</td><td>322</td><td>17</td></tr>
<tr><td>2026-09</td><td>717</td><td>21</td></tr>
<tr><td>2026-08</td><td>795</td><td>3</td></tr>
<tr><td>2026-07</td><td>307</td><td>1</td></tr>
Expand All @@ -239,25 +239,25 @@ <h2>Disorder Page Section Coverage</h2>
<th>Average Items / Entry</th>
</tr>
</thead>
<tbody><tr><td>Phenotypes</td><td>3,610</td><td>100.0%</td><td>47,792</td><td>13.2</td></tr>
<tr><td>Pathophysiology</td><td>3,608</td><td>99.9%</td><td>25,684</td><td>7.1</td></tr>
<tr><td>Treatments</td><td>3,436</td><td>95.2%</td><td>15,292</td><td>4.2</td></tr>
<tr><td>Genetics</td><td>3,159</td><td>87.5%</td><td>7,733</td><td>2.1</td></tr>
<tr><td>Diagnostics</td><td>2,814</td><td>77.9%</td><td>7,067</td><td>2.0</td></tr>
<tr><td>Inheritance</td><td>2,537</td><td>70.3%</td><td>2,903</td><td>0.8</td></tr>
<tr><td>Prevalence</td><td>2,439</td><td>67.5%</td><td>3,354</td><td>0.9</td></tr>
<tr><td>Classifications</td><td>1,732</td><td>48.0%</td><td>2,427</td><td>0.7</td></tr>
<tr><td>Differential Diagnoses</td><td>1,574</td><td>43.6%</td><td>4,716</td><td>1.3</td></tr>
<tr><td>Animal Models</td><td>1,433</td><td>39.7%</td><td>2,824</td><td>0.8</td></tr>
<tr><td>Progression</td><td>1,360</td><td>37.7%</td><td>2,979</td><td>0.8</td></tr>
<tbody><tr><td>Phenotypes</td><td>3,616</td><td>100.0%</td><td>47,879</td><td>13.2</td></tr>
<tr><td>Pathophysiology</td><td>3,614</td><td>99.9%</td><td>25,716</td><td>7.1</td></tr>
<tr><td>Treatments</td><td>3,440</td><td>95.1%</td><td>15,300</td><td>4.2</td></tr>
<tr><td>Genetics</td><td>3,165</td><td>87.5%</td><td>7,739</td><td>2.1</td></tr>
<tr><td>Diagnostics</td><td>2,819</td><td>77.9%</td><td>7,079</td><td>2.0</td></tr>
<tr><td>Inheritance</td><td>2,543</td><td>70.3%</td><td>2,909</td><td>0.8</td></tr>
<tr><td>Prevalence</td><td>2,441</td><td>67.5%</td><td>3,356</td><td>0.9</td></tr>
<tr><td>Classifications</td><td>1,735</td><td>48.0%</td><td>2,431</td><td>0.7</td></tr>
<tr><td>Differential Diagnoses</td><td>1,576</td><td>43.6%</td><td>4,721</td><td>1.3</td></tr>
<tr><td>Animal Models</td><td>1,438</td><td>39.8%</td><td>2,836</td><td>0.8</td></tr>
<tr><td>Progression</td><td>1,361</td><td>37.6%</td><td>2,982</td><td>0.8</td></tr>
<tr><td>Biochemical Markers</td><td>1,138</td><td>31.5%</td><td>2,933</td><td>0.8</td></tr>
<tr><td>Datasets</td><td>701</td><td>19.4%</td><td>1,924</td><td>0.5</td></tr>
<tr><td>Clinical Trials</td><td>701</td><td>19.4%</td><td>1,648</td><td>0.5</td></tr>
<tr><td>Experimental Models</td><td>658</td><td>18.2%</td><td>1,353</td><td>0.4</td></tr>
<tr><td>Environmental Factors</td><td>650</td><td>18.0%</td><td>1,387</td><td>0.4</td></tr>
<tr><td>Environmental Factors</td><td>651</td><td>18.0%</td><td>1,388</td><td>0.4</td></tr>
<tr><td>Histopathology</td><td>582</td><td>16.1%</td><td>1,085</td><td>0.3</td></tr>
<tr><td>Definitions</td><td>313</td><td>8.7%</td><td>404</td><td>0.1</td></tr>
<tr><td>Epidemiology</td><td>215</td><td>6.0%</td><td>422</td><td>0.1</td></tr>
<tr><td>Epidemiology</td><td>215</td><td>5.9%</td><td>422</td><td>0.1</td></tr>
<tr><td>Transmission</td><td>204</td><td>5.6%</td><td>351</td><td>0.1</td></tr>
<tr><td>Computational Models</td><td>49</td><td>1.4%</td><td>102</td><td>0.0</td></tr>
<tr><td>Stages</td><td>44</td><td>1.2%</td><td>124</td><td>0.0</td></tr></tbody>
Expand All @@ -270,10 +270,10 @@ <h2>MONDO Coverage</h2>
<dl class="metric-list metric-list-compact">
<div><dt>MONDO scope</dt><dd>human disease (MONDO:0700096) descendants</dd></div>
<div><dt>Total MONDO terms in scope</dt><dd>23,237</dd></div>
<div><dt>Exact DISMECH pages</dt><dd>3,526</dd></div>
<div><dt>Represented by parent disorder page</dt><dd>7,870</dd></div>
<div><dt>Represented only by child disorder page</dt><dd>1,911</dd></div>
<div><dt>Exact or parent-page representation</dt><dd>49.0%</dd></div>
<div><dt>Exact DISMECH pages</dt><dd>3,532</dd></div>
<div><dt>Represented by parent disorder page</dt><dd>7,868</dd></div>
<div><dt>Represented only by child disorder page</dt><dd>1,912</dd></div>
<div><dt>Exact or parent-page representation</dt><dd>49.1%</dd></div>
<div><dt>Any page relation</dt><dd>57.3%</dd></div>
</dl>
<p class="note">
Expand All @@ -295,9 +295,9 @@ <h3>Human Disease Class Coverage</h3>
</tr>
</thead>
<tbody><tr><td>acute disease</td><td><a href="http://purl.obolibrary.org/obo/MONDO_0020683" target="_blank" rel="noopener">MONDO:0020683</a></td><td>404</td><td>47</td><td>244</td><td>10</td><td>72.0%</td></tr>
<tr><td>disease by developmental or physiological process</td><td><a href="http://purl.obolibrary.org/obo/MONDO_7770007" target="_blank" rel="noopener">MONDO:7770007</a></td><td>7,298</td><td>1,480</td><td>2,680</td><td>519</td><td>57.0%</td></tr>
<tr><td>disease by etiologic mechanism</td><td><a href="http://purl.obolibrary.org/obo/MONDO_7770008" target="_blank" rel="noopener">MONDO:7770008</a></td><td>17,801</td><td>3,089</td><td>6,956</td><td>1,176</td><td>56.4%</td></tr>
<tr><td>disease by body system or component</td><td><a href="http://purl.obolibrary.org/obo/MONDO_7770006" target="_blank" rel="noopener">MONDO:7770006</a></td><td>18,826</td><td>2,823</td><td>7,433</td><td>1,322</td><td>54.5%</td></tr></tbody>
<tr><td>disease by developmental or physiological process</td><td><a href="http://purl.obolibrary.org/obo/MONDO_7770007" target="_blank" rel="noopener">MONDO:7770007</a></td><td>7,298</td><td>1,481</td><td>2,679</td><td>519</td><td>57.0%</td></tr>
<tr><td>disease by etiologic mechanism</td><td><a href="http://purl.obolibrary.org/obo/MONDO_7770008" target="_blank" rel="noopener">MONDO:7770008</a></td><td>17,801</td><td>3,095</td><td>6,954</td><td>1,177</td><td>56.5%</td></tr>
<tr><td>disease by body system or component</td><td><a href="http://purl.obolibrary.org/obo/MONDO_7770006" target="_blank" rel="noopener">MONDO:7770006</a></td><td>18,826</td><td>2,827</td><td>7,431</td><td>1,323</td><td>54.5%</td></tr></tbody>
</table>
</div>

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