Refactor input handling and config, remove chunking

.cursorrules

@@ -0,0 +1,10 @@
+IMPORTANT: To run tests, **alwasy** run the following command This command take a long time to return. Wait at least 5 minutes
+askds --system-prompt="./prompts/fix-tests.txt" cargo test
+
+WAIT A LONG TIME FOR askds to run the tests and find the issues.
+
+use the output of the command to fix the tests.
+
+IMPORTANT: Before committing, run `cargo fmt` and `cargo clippy` and `askds --system-prompt="./prompts/fix-tests.txt" cargo test` to ensure code is formatted and linted correctly.
+
+IMPORTANT never commit without running the tests.

.github/workflows/ailoop.yaml

@@ -19,6 +19,7 @@ on:
 permissions:
   contents: write
   pull-requests: write
+  issues: write
 
 jobs:
   loop:
@@ -67,6 +68,7 @@ jobs:
 
       - name: Run AI Fix
         timeout-minutes: 360
+        continue-on-error: true
         id: ai_fix
         env:
           DEEPSEEK_API_KEY: ${{ secrets.DEEPSEEK_API_KEY }}
@@ -83,19 +85,13 @@ jobs:
           name: attempts-log
           path: attempts.txt
 
-      - name: Push changes
-        if: always() && ${{ github.event.inputs.pr-on-fail }}
-        run: |
-          git checkout -b ${{ env.BRANCH }}-ai-fix-${{ env.SHORT_DATE }}
-          git push origin ${{ env.BRANCH }}-ai-fix-${{ env.SHORT_DATE }}
-        env:
-          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-
-      - name: Create PR
+      - name: Create PR or Issue
         if: always() && ${{ github.event.inputs.pr-on-fail }}
         uses: peter-evans/create-pull-request@v5
+        env:
+          GH_TOKEN: ${{ secrets.PAT_TOKEN }}
         with:
-          token: ${{ secrets.GITHUB_TOKEN }}
+          token: ${{ env.GH_TOKEN }}
           commit-message: "AI Fix"
           title: "AI Fix for ${{ env.BRANCH }} (Attempts: ${{ env.MAX_ATTEMPTS }})"
           body: |

.github/workflows/test-install.yml

@@ -104,7 +104,7 @@ jobs:
             exit 1
           }
           # Verify output exists
-          test -f repo-serialized/chunk-0.txt || {
+          test -f repo-serialized/output.txt || {
             echo "Error: Output file not found"
             ls -la repo-serialized/ || true
             exit 1
@@ -204,7 +204,7 @@ jobs:
             exit 1
           }
           # Verify output exists
-          if (-not (Test-Path repo-serialized/chunk-0.txt)) {
+          if (-not (Test-Path repo-serialized/output.txt)) {
             Write-Error "Output file not found"
             Get-ChildItem repo-serialized -ErrorAction SilentlyContinue
             exit 1
@@ -299,7 +299,7 @@ jobs:
             exit 1
           }
           # Verify output exists
-          test -f repo-serialized/chunk-0.txt || {
+          test -f repo-serialized/output.txt || {
             echo "Error: Output file not found"
             ls -la repo-serialized/ || true
             exit 1

.gitignore

@@ -8,3 +8,5 @@ yek.toml
 repo-serialized/
 dist/
 /*.txt
+/*.diff
+/*.sh