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1. Pseudotime-downstream-by-ML Pseudotime-downstream-by-ML Public

   This script utilizes Monocle3 for inferring pseudotime and employs gradient boosting machine learning (xgboost) to identify genes predictive of pseudotime. Subsequently, it fits a regression model …

   R

2. FOUNDIN-PD FOUNDIN-PD Public

   Multiomics analysis for FOUNDIN-PD project

   R

3. scMoMsQC scMoMsQC Public

   Forked from Rachmanichou/scMoMsQC

   A Python pipeline for quality control analysis and outlier detection in multisample single-cell multiomics and RNAseq.

   HTML

4. scROCK scROCK Public

   Forked from dos257/scROCK

   Python

5. Spatial-multiomics-PDAC Spatial-multiomics-PDAC Public

   multiomics including spatial trx for niche discovery in PDAC

   Jupyter Notebook 1

6. Optimal-Transport-for-Single-Cell- Optimal-Transport-for-Single-Cell- Public

   utilizing the power of OT learning to quantify and visualize global non-linear distances in scRNAseq data of mutated lines vs CRISPR-corrected isogenic lines

   Jupyter Notebook