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Merged
TuomasBorman merged 5 commits into from
Aug 10, 2026
Merged

plotHeatmap #231

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Add plotHeatmap
TuomasBorman Aug 7, 2026
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TuomasBorman Aug 7, 2026
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TuomasBorman Aug 9, 2026
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TuomasBorman Aug 9, 2026
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TuomasBorman Aug 10, 2026
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2 changes: 1 addition & 1 deletion DESCRIPTION
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Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
Package: miaViz
Title: Microbiome Analysis Plotting and Visualization
Version: 1.21.3
Version: 1.21.4
Authors@R:
c(person(given = "Tuomas", family = "Borman", role = c("aut", "cre"),
email = "tuomas.v.borman@utu.fi",
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1 change: 1 addition & 0 deletions NEWS
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Expand Up @@ -54,3 +54,4 @@ Changes in version 1.19.x

Changes in version 1.21.x
+ Added plotOrdination and plotJointRPCA (2026-08-04)
+ Added plotHeatmap (2026-08-xx)
5 changes: 5 additions & 0 deletions R/AllGenerics.R
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# All generic methods are listed here

#' @rdname getNeatOrder
setGeneric("getNeatOrder", signature = c("x"),

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[lintr] Variable and function name style should match snake_case or symbols.
function(x, centering = "mean", ...)

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[lintr] Hanging indent should be 11 spaces but is 4 spaces.
standardGeneric("getNeatOrder"))

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[lintr] Indentation should be 13 spaces but is 4 spaces.

#' @rdname plotAbundance
setGeneric("plotAbundance", signature = c("x"), function(x, ...)

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standardGeneric("plotAbundance"))

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#' @rdname plotAbundanceDensity
#' @export
setGeneric("plotAbundanceDensity", signature = c("x"), function(x, ...)

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standardGeneric("plotAbundanceDensity"))

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#' @rdname plotCCA
#' @aliases plotRDA
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#' @export
setGeneric("plotJointRPCA", signature = c("x"), function(x, ...)
standardGeneric("plotJointRPCA"))

#' @rdname plotHeatmap
#' @export
setGeneric("plotHeatmap", signature = c("x"), function(x, ...)
standardGeneric("plotHeatmap"))
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