mefistotools is a collection of helper function to streamline the analysis of multiomics data with MEFISTO. Practical uses incluse filtering of data (simply or variance based using two-way ANOVA) as well as batch effect removal with reComBat and some plotting function to assess resulting factors etc.
To install simply clone the repository and run pip install . from within the cloned directory like so
git clone [email protected]:menchelab/mefistotools.git
cd mefistotools
pip install .
If you use it please consider citing Grundtner et al.