Stability paper --- Figures

Supporting repository for the stability manuscript. The reporsitory contains code to generate figures and correspdoning statistics where needed.

Figures and code

Currently, generated figures are located in the output folder. To regenerate the figures, first step would be to downloaded necessary data with the helper script.

Downloading the data

get_data.sh script is here to access the data used in the work. Example usage:

git clone https://github.com/melonheader/stability---figures.git
cd stability---figures
bash get_data.sh -o ./

Regenerating the figures

Running the entirety of R notebook ./src/code.RMD will save all figures in the ./outputfolder. Short descriptions for the outpout could be found above code-chunks in the same notebook.
Opening the repository as an Rproject is recommended.

Reproducible environment

Currently, the state of the project's libraries is saved with renv R package. To restore the packages with the same versions used in the initial analysis one can run:

renv::restore()

in the beginning of the ./src/code.RMD notebook.