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McVicker Lab

8 followers
Salk Institute for Biological Studies
http://mcvicker.salk.edu/

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WASP2 WASP2 Public

Allele-specific pipeline for unbiased read mapping(WIP), QTL discovery(WIP), and allelic-imbalance analysis

Python 6
GenVarLoader GenVarLoader Public

Dataloader for applying sequence models to personalized genomics

Python 26 6

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Showing 6 of 6 repositories

GenVarLoader Public
Dataloader for applying sequence models to personalized genomics

mcvickerlab/GenVarLoader’s past year of commit activity

Python 26 MIT 6 5 2 Updated Jun 11, 2025
varCA Public
Use an ensemble of variant callers to call variants from ATAC-seq data

mcvickerlab/varCA’s past year of commit activity

Python 23 MIT 7 20 (2 issues need help) 1 Updated May 14, 2025
sn_cocaine_rats Public

mcvickerlab/sn_cocaine_rats’s past year of commit activity

Python 2 MIT 0 0 0 Updated Jan 24, 2025
WASP2 Public
Allele-specific pipeline for unbiased read mapping(WIP), QTL discovery(WIP), and allelic-imbalance analysis

mcvickerlab/WASP2’s past year of commit activity

Python 6 0 3 0 Updated Sep 25, 2024
GLiMMIRS Public
GLiMMIRS: Generalized Linear Models for Measuring Interactions between Regulatory Sequences

mcvickerlab/GLiMMIRS’s past year of commit activity

Jupyter Notebook 3 MIT 0 0 1 Updated Aug 29, 2024
runaAI Public

mcvickerlab/runaAI’s past year of commit activity

Dockerfile 0 0 0 0 Updated Feb 2, 2024

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