v3.1.0

What's Changed

• Dev ks by @katsikora in #1042
• Dev ks by @katsikora in #1043
• Fix CI test by @katsikora in #1046
• fix 1023 by @katsikora in #1047
• fix 1025 by @katsikora in #1052
• Fix 1049 and 1009 by @katsikora in #1054
• docs by @katsikora in #1055
• drop log as omitted by profile by @WardDeb in #1059
• Pairtools merge by @WardDeb in #1067
• Create indices orgyamls by @WardDeb in #1072
• 3.1.0 by @WardDeb in #1073

Full Changelog: v3.0.0...v3.1.0