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fixed typos
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cwehmeyer committed Apr 6, 2016
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Expand Up @@ -15,6 +15,7 @@ EMMA (Emma's Markov Model Algorithms)
.. image:: https://coveralls.io/repos/markovmodel/PyEMMA/badge.svg?branch=devel
:target: https://coveralls.io/r/markovmodel/PyEMMA?branch=devel


What is it?
-----------
PyEMMA (EMMA = Emma's Markov Model Algorithms) is an open source
Expand All @@ -25,14 +26,15 @@ of:
* Clustering and Featurization
* Markov state models (MSMs)
* Hidden Markov models (HMMs)
* multi-ensemble Markov models (MEMMs)
* Multi-ensemble Markov models (MEMMs)
* Time-lagged independent component analysis (TICA)
* Transition Path Theory (TPT)

PyEMMA can be used from Jupyther (former IPython, recommended), or by
PyEMMA can be used from Jupyter (former IPython, recommended), or by
writing Python scripts. The docs, can be found at
`http://pyemma.org <http://www.pyemma.org/>`__.


Citation
--------
If you use PyEMMA in scientific work, please cite:
Expand All @@ -46,17 +48,16 @@ If you use PyEMMA in scientific work, please cite:
Installation
------------
With pip::
pip install pyemma

with conda::
pip install pyemma

conda install -c omnia pyemma
with conda::

conda install -c omnia pyemma

or install latest devel branch with pip::

pip install git+https://github.com/markovmodel/PyEMMA.git@devel
pip install git+https://github.com/markovmodel/PyEMMA.git@devel

For a complete guide to installation, please have a look at the version
`online <http://www.emma-project.org/latest/INSTALL.html>`__ or offline in file
Expand All @@ -70,9 +71,10 @@ Then build with make::

cd doc; make html


Support and development
-----------------------
For bug reports/sugguestions/complains please file an issue on
For bug reports/suggestions/complaints please file an issue on
`GitHub <http://github.com/markovmodel/PyEMMA>`__.

Or start a discussion on our mailing list: [email protected]
Expand All @@ -83,4 +85,4 @@ External Libraries
* mdtraj (LGPLv3): https://mdtraj.org
* bhmm (LGPLv3): http://github.com/bhmm/bhmm
* msmtools (LGLPv3): http://github.com/markovmodel/msmtools

* thermotools (LGLPv3): http://github.com/markovmodel/thermotools

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