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Updated README and docs index.
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franknoe authored and marscher committed Feb 18, 2016
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Expand Up @@ -22,11 +22,12 @@ Python/C package for analysis of extensive molecular dynamics simulations.
In particular, it includes algorithms for estimation, validation and analysis
of:

* Clustering and Featurization
* Markov state models (MSMs)
* Hidden Markov models (HMMs)
* multi-ensemble Markov models (MEMMs)
* Time-lagged independent component analysis (TICA)
* Clustering and Featurization.
* Transition Path Theory (TPT)

PyEMMA can be used from Jupyther (former IPython, recommended), or by
writing Python scripts. The docs, can be found at
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