[doc] added estimation with fixed stat dist

markovmodel · Dec 1, 2015 · 1eee34d · 1eee34d
1 parent 8f5bcb7
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Showing 2 changed files with 9 additions and 5 deletions.
diff --git a/doc/source/ipython.rst b/doc/source/ipython.rst
@@ -18,9 +18,7 @@ Application walkthroughs
    :maxdepth: 1
 
    generated/pentapeptide_msm
-
    generated/MSM_BPTI
-
    generated/trypsin_benzamidine_hmm
 
 
@@ -44,9 +42,15 @@ In this section we will give you in-depth tutorials on specific methods or conce
    :maxdepth: 1
 
    generated/feature_selection
-
    generated/model_selection_validation
-
    generated/tpt
 
 
+Estimation with fixed equilibrium distribution
+----------------------------------------------
+
+.. toctree::
+   :maxdepth: 1
+
+   generated/doublewell
+   generated/alanine
diff --git a/pyemma-ipython b/pyemma-ipython
+0 −3		methods/msm_with_given_equilibrium/alanine/alanine.ipynb
+0 −3		methods/msm_with_given_equilibrium/doublewell/doublewell.ipynb