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Update README.md
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kairukuma authored Apr 8, 2024
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scGHOST can use up to 40 GB of memory for a single-cell dataset of 4,238 cells.
Considering operating system overhead, we recommend running scGHOST on a machine with at least 64 GB of memory to avoid poor performance or out-of-memory errors at runtime.

scGHOST was developed on a system with a 12-core 12th generation Intel CPU, an Nvidia RTX 3090 GPU with 24GB of VRAM, and 64GB of system memory. With GPU caching enabled, scGHOST uses a maximum of 15 GB of VRAM on the PFC dataset. With GPU caching disabled, VRAM becomes less of a limiting factor and scGHOST should run on any CUDA-capable GPU.
scGHOST was developed on a system with a 12-core 12th generation Intel CPU, an Nvidia RTX 3090 GPU with 24GB of VRAM, and 64GB of system memory. With GPU caching enabled, scGHOST uses a maximum of 15 GB of VRAM on the PFC dataset. With GPU caching disabled, VRAM becomes less of a limiting factor and scGHOST should run on any CUDA-capable GPU with at least 4 GB of VRAM.

## Usage

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`python scghost.py --config sample_configs/config_wtc.json`

## Contact
Please email [email protected] or raise an issue in the github repository with any questions about installation or usage.
Please email [email protected] or raise an issue in the github repository with any questions about installation or usage or any encountered bugs.

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