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@@ -43,7 +43,7 @@ Systems without a CUDA-capable GPU can also install scGHOST using the same depen | |
scGHOST can use up to 40 GB of memory for a single-cell dataset of 4,238 cells. | ||
Considering operating system overhead, we recommend running scGHOST on a machine with at least 64 GB of memory to avoid poor performance or out-of-memory errors at runtime. | ||
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scGHOST was developed on a system with a 12-core 12th generation Intel CPU, an Nvidia RTX 3090 GPU with 24GB of VRAM, and 64GB of system memory. With GPU caching enabled, scGHOST uses a maximum of 15 GB of VRAM on the PFC dataset. With GPU caching disabled, VRAM becomes less of a limiting factor and scGHOST should run on any CUDA-capable GPU. | ||
scGHOST was developed on a system with a 12-core 12th generation Intel CPU, an Nvidia RTX 3090 GPU with 24GB of VRAM, and 64GB of system memory. With GPU caching enabled, scGHOST uses a maximum of 15 GB of VRAM on the PFC dataset. With GPU caching disabled, VRAM becomes less of a limiting factor and scGHOST should run on any CUDA-capable GPU with at least 4 GB of VRAM. | ||
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## Usage | ||
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@@ -93,4 +93,4 @@ Please follow our tutorial notebooks in the root directory for examples on how t | |
`python scghost.py --config sample_configs/config_wtc.json` | ||
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## Contact | ||
Please email [email protected] or raise an issue in the github repository with any questions about installation or usage. | ||
Please email [email protected] or raise an issue in the github repository with any questions about installation or usage or any encountered bugs. |