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@loosolab

Looso bioinformatics lab

Group of bioinformatics at the Max Planck Institute for Heart and Lung Research

Popular repositories Loading

  1. TOBIAS TOBIAS Public

    Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal

    Python 208 39

  2. scanpro scanpro Public

    A modular tool for proportion analysis in single-cell sequencing data

    Jupyter Notebook 18 1

  3. UROPA UROPA Public

    Universal RObust Peak Annotator

    Python 15 6

  4. TF-COMB TF-COMB Public

    Transcription Factor Co-Occurrence using Market Basket analysis

    Python 12 1

  5. i2dash i2dash Public

    i2dash: interactive and iterative dashboards.

    R 10 3

  6. cardiac-progenitors cardiac-progenitors Public

    Single cell RNA-seq and ATAC seq analysis of cardiac progenitor cell transition states and lineage settlement

    R 9 3

Repositories

Showing 10 of 29 repositories
  • loosolab/FRED_whitelists’s past year of commit activity
    Python 0 0 0 0 Updated Mar 12, 2025
  • SC-Framework Public

    A framework for single cell analysis

    loosolab/SC-Framework’s past year of commit activity
    Python 2 1 0 0 Updated Mar 10, 2025
  • loosolab/Code_Jafari_et_al_2024_cteph_rv_reverse_remodeling’s past year of commit activity
    R 0 MIT 0 0 0 Updated Mar 5, 2025
  • loosolab/biodaten24-25-large_bulk_multiomics’s past year of commit activity
    Python 2 0 0 0 Updated Feb 27, 2025
  • PEAKQC Public

    PEAK-QC: Periodicity Evaluation in ATAC-seq as Key aspect in Quality Control

    loosolab/PEAKQC’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Feb 6, 2025
  • scanpro Public

    A modular tool for proportion analysis in single-cell sequencing data

    loosolab/scanpro’s past year of commit activity
    Jupyter Notebook 18 MIT 1 0 0 Updated Feb 4, 2025
  • TOBIAS Public

    Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal

    loosolab/TOBIAS’s past year of commit activity
    Python 208 MIT 39 5 0 Updated Jan 24, 2025
  • TOBIAS_snakemake Public

    Snakemake pipeline for running TOBIAS analysis

    loosolab/TOBIAS_snakemake’s past year of commit activity
    Python 7 MIT 2 8 0 Updated Nov 26, 2024
  • loosolab/Code_Jin_et_al_2024_Atherosclerosis_PKN1’s past year of commit activity
    R 0 MIT 0 0 0 Updated Nov 18, 2024
  • denis Public

    framework for de novo motif generation on ATAC-seq

    loosolab/denis’s past year of commit activity
    Python 3 MIT 1 2 0 Updated Nov 12, 2024

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