Installation

Requires Python 3.6.9.

1. pip install -r requirements.txt
2. python3 -m spacy download en_core_web_md
3. Clone ClausIE to ./learning_based/pyclausie (https://github.com/AnthonyMRios/pyclausie)
4. Install with: cd ./learning_based/pyclausie python3 setup.py install
5. Clone OpenIE5 to ./learning_based/OpenIE-Standalone (https://github.com/dair-iitd/OpenIE-standalone)
6. Run OIE5 with: cd ./learning_based/OpenIE-standalone java -Xmx16g -jar openie-assembly-5.0-SNAPSHOT.jar --httpPort 9000
7. Download Stanford CoreNLP Server 3.9.2 to ./rule_based/parser (https://stanfordnlp.github.io/CoreNLP/history.html)
8. Run the parser: java -mx6g -cp "./rule_based/parser/*" edu.stanford.nlp.pipeline.StanfordCoreNLPServer -port 10000 -timeout 30000
9. Run the learning-based extractor: python3 ./learning_based/paralleloie.py -i data/pubmedabstracts.json
10. Run the rule-based extractor-refiner: python3 ./rule_based/extract_refine.py -i extracted_triples_learning.csv