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Merge pull request artic-network#44 from will-rowe/subtree
replacing primer scheme submodule with a git subtree
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|---|---|---|
| @@ -1,3 +0,0 @@ | ||
| [submodule "primer-schemes"] | ||
| path = primer-schemes | ||
| url = https://github.com/artic-network/primer-schemes | ||
Submodule primer-schemes
deleted from
7d5102
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| @@ -0,0 +1,26 @@ | ||
| dist: xenial | ||
| language: python # this works for Linux but is an error on macOS or Windows | ||
| jobs: | ||
| include: | ||
| - name: "Python 3.6 on Xenial Linux" | ||
| python: 3.6 # this works for Linux but is ignored on macOS or Windows | ||
| - name: "Python 3.6 on macOS" | ||
| os: osx | ||
| language: shell # 'language: python' is an error on Travis CI macOS | ||
| python: 3.6 | ||
|
|
||
| install: | ||
| - if [[ "$TRAVIS_OS_NAME" == "linux" ]]; then MINICONDA_OS=Linux; else MINICONDA_OS=MacOSX; fi | ||
| - wget https://repo.anaconda.com/miniconda/Miniconda3-latest-$MINICONDA_OS-x86_64.sh -O miniconda.sh | ||
| - bash miniconda.sh -b -p "$HOME"/miniconda | ||
| - source "$HOME/miniconda/etc/profile.d/conda.sh" | ||
| - hash -r | ||
| - conda config --set always_yes yes --set changeps1 no | ||
| - conda update -q conda | ||
| - conda info -a | ||
| - conda create -y -n primerSchemes -c conda-forge -c bioconda artic-tools | ||
| - conda activate primerSchemes | ||
|
|
||
| script: | ||
| # validate the schemes using artic-tools | ||
| for i in */V*/*.primer.bed; do artic-tools validate_scheme $i; done; |
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