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Merged
leaffur merged 1 commit into from
Dec 15, 2024
Merged

update vignettes #13

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2 changes: 1 addition & 1 deletion data-raw/example_data.R
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Original file line number Diff line number Diff line change
@@ -1,7 +1,7 @@
## code to prepare `example_data` dataset goes here
library(CorBin)

set.seed(1024)
set.seed(1000)
N = 500
M = 1000
C = 3
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3 changes: 2 additions & 1 deletion vignettes/Introduction_to_CASE.Rmd
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Expand Up @@ -22,6 +22,7 @@ First, load necessary packages.
library(CASE)
library(ggplot2)
library(susieR)
set.seed(1000)
```

```{r}
Expand All @@ -38,7 +39,7 @@ cat("sample size =", N, "\n",
"Cell type number =", C, "\n")
```

Let's have a look at how the Linkage Disequilibrium (LD) of the example data looks like.
Let's have a look at the Linkage Disequilibrium (LD) of the example genotype.

```{r}
R = cor(X)
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