Preparing for v0.1.6 CRAN submission

DESCRIPTION

@@ -1,8 +1,8 @@
 Package: gateR
 Type: Package
 Title: Flow/Mass Cytometry Gating via Spatial Kernel Density Estimation
-Version: 0.1.5
-Date: 2020-01-04
+Version: 0.1.6
+Date: 2021-01-07
 Authors@R: 
     c(person(given = "Ian D.",
              family = "Buller",

NEWS.md

@@ -1,5 +1,9 @@
 # gateR (development version)
 
+# gateR v0.1.6
+  * Updated URLs in gateR-package.Rd
+  * Updated year in DESCRIPTION
+
 # gateR v0.1.5
   * Added arguments 'save_gate', 'name_gate', and 'path_gate' in lotrrs(), rrs(), and gating() to save plots as PNG files as output
   * Renamed 'doplot' argument as 'plot_gate' for consistency with new plotting arguments

R/package.R

@@ -2,7 +2,7 @@
 #'
 #' Estimates statistically significant fluorescent marker combination values within which one immunologically distinctive group (i.e., disease case) is more associated than another group (i.e., healthy control), successively, using various combinations (i.e., "gates") of fluorescent markers to examine features of cells that may be different between groups.
 #'
-#' @details For a two-group comparison, the 'gateR' package uses the spatial relative risk function that is estimated using the {sparr} package. Details about the {sparr} package methods can be found in the tutorial: Davies et al. (2018) \url{https://doi.org/10.1002/sim.7577}. Details about kernel density estimation can be found in J. F. Bithell (1990) \url{https://doi.org/10.1002/sim.4780090616}. More information about relative risk functions using kernel density estimation can be found in J. F. Bithell (1991) \url{https://doi.org/10.1002/sim.4780101112}.
+#' @details For a two-group comparison, the 'gateR' package uses the spatial relative risk function that is estimated using the {sparr} package. Details about the {sparr} package methods can be found in the tutorial: Davies et al. (2018) \doi{10.1002/sim.7577}. Details about kernel density estimation can be found in J. F. Bithell (1990) \doi{10.1002/sim.4780090616}. More information about relative risk functions using kernel density estimation can be found in J. F. Bithell (1991) \doi{10.1002/sim.4780101112}.
 #' 
 #' This package provides a function to perform a gating strategy for flow cytometry data. The 'gateR' package also provides basic visualization for each gate.
 #' 

cran-comments.md

@@ -1,14 +1,8 @@
-## This is the fifth resubmission
+## This is the sixth resubmission
 
-* Actions taken since previous resubmission:
-  * Added arguments 'save_gate', 'name_gate', and 'path_gate' in lotrrs(), rrs(), and gating() to save plots as PNG files as output
-  * Renamed 'doplot' argument as 'plot_gate' for consistency with new plotting arguments
-  * Added a stop (and return no results) if no significant clusters detected during first gate
-  * Removed 'verbose' argument in gating(), rrs(), and lotrrs()
-  * Added try() error catches in rrs() and lotrrs() for 'c1n' and 'c2n' arguments
-  * Changed the 'right' argument in cut() in pval_plot() to "TRUE" (the default)
-  * Removed fullstop in error messages
-  * Added a make.names() check for vars and colnames(dat) in gating()
+* Actions taken after feedback from Uwe Ligges:
+  * Updated URLs in gateR-package.Rd
+  * Updated year in DESCRIPTION
 
 ## Test environments
 * local OS X install, R 3.6.3