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1. kuijjerlab/sponge kuijjerlab/sponge Public

   Python package to generate prior gene regulatory networks.

   Python 1

2. stoat stoat Public

   Python package to generate spatially resolved gene regulatory networks from spatial transcriptomics data.

   Python 1

3. lioness_sparsity_snakemake lioness_sparsity_snakemake Public

   Snakemake pipeline for LIONESS sparsity testing.

   Python

4. lioness_sparsity_scripts lioness_sparsity_scripts Public

   Python scripts for the LIONESS sparsity testing pipelines.

   Python

5. comet comet Public

   C++ code for optimising coefficients of individual CVs for PCV MD simulations.

   C++

6. sim-plusplus sim-plusplus Public

   C++ code for doing simple molecular dynamics of particles with Lennard-Jones potential.

   C++ 1