Functions and data for running the benchmarks. Requires MATLAB and CellNetAnalyzer (http://www2.mpi-magdeburg.mpg.de/projects/cna/cna.html, version 2020.2 or later). The main function is FLB_NB_benchmarks which executes the enumerations for the problems provided by an input file. There are six input files:
iJM658_mcs_input.mat - growth-coupled production for 94 metabolites in the iJM658 model iJM658_synthetic_lethals_input.mat - synthetic lethals for 11 mue thresholds in the iJM658 model iJO1366_mcs_input.mat - growth-coupled production for 49 metabolites in the iJO1366 model iJO1366_synthetic_lethals_input.mat - synthetic lethals for 11 mue thresholds in the iJO1366 model iMM904_mcs_input.mat - growth-coupled production for 45 metabolites in the iMM904 model iMM904_synthetic_lethals_input.mat - synthetic lethals for 11 mue thresholds in the iMM904 model
Some examples how to execute the enumerations are given in FLB_NB_benchmark_examples.m.