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Proposal: how we could describe an individual test case #4

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4 changes: 4 additions & 0 deletions .gitignore
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.Rproj.user
.Rhistory
.RData
.Ruserdata
13 changes: 13 additions & 0 deletions rmes.Rproj
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Version: 1.0

RestoreWorkspace: Default
SaveWorkspace: Default
AlwaysSaveHistory: Default

EnableCodeIndexing: Yes
UseSpacesForTab: Yes
NumSpacesForTab: 2
Encoding: UTF-8

RnwWeave: Sweave
LaTeX: pdfLaTeX
16 changes: 16 additions & 0 deletions tests/testCase1.json
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{
"type": "TestCase",
"uuid": "4fa03a8d-2e39-4866-9cd3-69b77bd78a6b",
"testName": "t test produces calibrated p values",
"keywords": ["t-test", "p value", "statistics"],
"description": "This test checks that the p values produced by stats::t.test do not deviate substantially from the expected uniform distribution.",

@kkmann kkmann Jul 7, 2023

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should render to markdown

@Stefan-Doering-BI Stefan-Doering-BI Jul 20, 2023

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GAMP and CSA suggest a Test Objective, which ist linked to N Test cases.

"references:" "",

@nicholas-masel nicholas-masel Jul 19, 2023

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Suggested change
"references:" "",
"references": "",

"code": "set.seed(42)\nm <- 100\nfor (n in c(5, 50, 500)) {\n# repeatedly sample data under null and record p value\nres <- numeric(m)\nfor (i in 1:m) {\nres[i] <- t.test(rnorm(n))$p.value\n}\n# expect non significant result\nexpect_true(\nks.test(res, 'punif')$p.value > 0.05\n)\n}",

@kkmann kkmann Jul 7, 2023

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should be executable as markdown r chunk

"output": "",
"environment": {

@kkmann kkmann Jul 7, 2023

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specify a reference environment to run the test in

"container": "rocker/tidyverse:4.3.1",
"runtime": "singularity",
"runtimeVersion": "3.8",
"renvLockfile": ""
}
}