Issues

• Bug during C++ compiling on linux HPC cluster

  kharchenkolab/cacoa#77 · Filter by author IgnacyCz opened on Jun 29, 2026

• argument "object" is missing, with no default while plotting embeddings

  bug
  Bug

  kharchenkolab/cacoa#56 · Filter by author reyvnth opened on Apr 30, 2025
  2

  

• What does a negative expression distance mean?

  kharchenkolab/cacoa#55 · Filter by author ThomasLLi opened on Dec 17, 2024

• estimateMetadataSeparation gives error

  bug
  kharchenkolab/cacoa#51 · Filter by author Laura19993 opened on Feb 25, 2024
  6

  

• estimateMetadataSeparation with space = "pseudo.bulk" returns error

  bug
  kharchenkolab/cacoa#50 · Filter by author rrydbirk opened on Feb 15, 2024
  

• Error calling estimateExpressionShiftMagnitudes function with Seurat object

  bug
  kharchenkolab/cacoa#49 · Filter by author mkazanov opened on Jan 4, 2024
  4

• Installation errors

  bug
  kharchenkolab/cacoa#41 · Filter by author daniel-spies opened on Mar 2, 2023
  1

  

• ClusterFreeExpression Not S4 object

  kharchenkolab/cacoa#29 · Filter by author jayp2919 opened on May 26, 2022
  3

  

• fails when sample.groups describes a subset of samples

  kharchenkolab/cacoa#28 · Filter by author pkharchenko opened on May 5, 2022
  

• Add a vignette explaining parameters for all analyses

  documentation
  kharchenkolab/cacoa#27 · Filter by author VPetukhov opened on May 5, 2022

• Troubles with estimateExpressionShiftMagnitudes() and estimateDiffCellDensity() functions

  bug
  kharchenkolab/cacoa#21 · Filter by author anastasiiaNG opened on Mar 19, 2022
  10