Resolve issue #523: updated dependencies in environment.yml #43

	name: CI

	on:
	push:
	branches: [master]
	pull_request:
	branches: [master]

	jobs:
	lint:
	runs-on: ubuntu-latest

	steps:
	- name: Check out Git repository
	uses: actions/checkout@v2

	- name: Set up Python
	uses: actions/setup-python@v2
	with:
	python-version: 3.7

	- uses: liskin/gh-problem-matcher-wrap@v1
	with:
	action: add
	linters: flake8

	- name: Lint with flake8
	shell: bash -l {0}
	run: \|
	pip install flake8
	# exit-zero treats all errors as warnings.
	flake8 . --ignore=E501 --exit-zero --statistics

	- uses: liskin/gh-problem-matcher-wrap@v1
	with:
	action: remove
	linters: flake8

	build:
	needs: lint
	runs-on: ubuntu-latest

	steps:
	- uses: actions/checkout@v2

	- name: Cache Conda
	uses: actions/cache@v2
	env:
	# change from default size of 32MB to prevent 503 err
	CACHE_UPLOAD_CHUNK_SIZE: 67108864
	with:
	path: /usr/share/miniconda/envs/lab
	key: ${{ runner.os }}-conda-${{ hashFiles('environment.yml') }}
	restore-keys: \|
	${{ runner.os }}-conda-

	- name: Setup Conda dependencies
	uses: conda-incubator/setup-miniconda@v2
	with:
	activate-environment: lab
	environment-file: environment.yml
	python-version: 3.7
	auto-activate-base: false

	- name: Conda info
	shell: bash -l {0}
	run: \|
	conda info
	conda list

	- uses: liskin/gh-problem-matcher-wrap@v1
	with:
	action: add
	linters: pytest

	- name: Run tests
	shell: bash -l {0}
	run: \|
	python setup.py test

	- uses: liskin/gh-problem-matcher-wrap@v1
	with:
	action: add
	linters: pytest

	- name: Test & publish code coverage
	uses: paambaati/[email protected]
	env:
	CC_TEST_REPORTER_ID: ${{ secrets.CC_TEST_REPORTER_ID }}

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