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kanaverse · Dec 4, 2024 · ec7e7d9 · ec7e7d9
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diff --git a/docs/DataFrame.html b/docs/DataFrame.html
@@ -1299,7 +1299,7 @@ <h5 class="h5-returns">Returns:</h5>
 <br class="clear">
 
 <footer>
-    Documentation generated by <a href="https://github.com/jsdoc3/jsdoc">JSDoc 4.0.4</a> on Tue Dec 03 2024 17:58:57 GMT+0000 (Coordinated Universal Time) using the <a href="https://github.com/clenemt/docdash">docdash</a> theme.
+    Documentation generated by <a href="https://github.com/jsdoc3/jsdoc">JSDoc 4.0.4</a> on Wed Dec 04 2024 00:50:11 GMT+0000 (Coordinated Universal Time) using the <a href="https://github.com/clenemt/docdash">docdash</a> theme.
 </footer>
 
 <script>prettyPrint();</script>

diff --git a/docs/DataFrame.js.html b/docs/DataFrame.js.html
@@ -182,7 +182,7 @@ <h1 class="page-title">DataFrame.js</h1>
 <br class="clear">
 
 <footer>
-    Documentation generated by <a href="https://github.com/jsdoc3/jsdoc">JSDoc 4.0.4</a> on Tue Dec 03 2024 17:58:57 GMT+0000 (Coordinated Universal Time) using the <a href="https://github.com/clenemt/docdash">docdash</a> theme.
+    Documentation generated by <a href="https://github.com/jsdoc3/jsdoc">JSDoc 4.0.4</a> on Wed Dec 04 2024 00:50:11 GMT+0000 (Coordinated Universal Time) using the <a href="https://github.com/clenemt/docdash">docdash</a> theme.
 </footer>
 
 <script>prettyPrint();</script>

diff --git a/docs/Matrix.html b/docs/Matrix.html
@@ -1641,7 +1641,7 @@ <h5 class="h5-returns">Returns:</h5>
 <br class="clear">
 
 <footer>
-    Documentation generated by <a href="https://github.com/jsdoc3/jsdoc">JSDoc 4.0.4</a> on Tue Dec 03 2024 17:58:57 GMT+0000 (Coordinated Universal Time) using the <a href="https://github.com/clenemt/docdash">docdash</a> theme.
+    Documentation generated by <a href="https://github.com/jsdoc3/jsdoc">JSDoc 4.0.4</a> on Wed Dec 04 2024 00:50:11 GMT+0000 (Coordinated Universal Time) using the <a href="https://github.com/clenemt/docdash">docdash</a> theme.
 </footer>
 
 <script>prettyPrint();</script>

diff --git a/docs/Matrix.js.html b/docs/Matrix.js.html
@@ -266,7 +266,7 @@ <h1 class="page-title">Matrix.js</h1>
 <br class="clear">
 
 <footer>
-    Documentation generated by <a href="https://github.com/jsdoc3/jsdoc">JSDoc 4.0.4</a> on Tue Dec 03 2024 17:58:57 GMT+0000 (Coordinated Universal Time) using the <a href="https://github.com/clenemt/docdash">docdash</a> theme.
+    Documentation generated by <a href="https://github.com/jsdoc3/jsdoc">JSDoc 4.0.4</a> on Wed Dec 04 2024 00:50:11 GMT+0000 (Coordinated Universal Time) using the <a href="https://github.com/clenemt/docdash">docdash</a> theme.
 </footer>
 
 <script>prettyPrint();</script>

diff --git a/docs/ReducedDimensionResult.html b/docs/ReducedDimensionResult.html
@@ -898,7 +898,7 @@ <h5 class="h5-returns">Returns:</h5>
 <br class="clear">
 
 <footer>
-    Documentation generated by <a href="https://github.com/jsdoc3/jsdoc">JSDoc 4.0.4</a> on Tue Dec 03 2024 17:58:57 GMT+0000 (Coordinated Universal Time) using the <a href="https://github.com/clenemt/docdash">docdash</a> theme.
+    Documentation generated by <a href="https://github.com/jsdoc3/jsdoc">JSDoc 4.0.4</a> on Wed Dec 04 2024 00:50:11 GMT+0000 (Coordinated Universal Time) using the <a href="https://github.com/clenemt/docdash">docdash</a> theme.
 </footer>
 
 <script>prettyPrint();</script>

diff --git a/docs/ReducedDimensionResult.js.html b/docs/ReducedDimensionResult.js.html
@@ -124,7 +124,7 @@ <h1 class="page-title">ReducedDimensionResult.js</h1>
 <br class="clear">
 
 <footer>
-    Documentation generated by <a href="https://github.com/jsdoc3/jsdoc">JSDoc 4.0.4</a> on Tue Dec 03 2024 17:58:57 GMT+0000 (Coordinated Universal Time) using the <a href="https://github.com/clenemt/docdash">docdash</a> theme.
+    Documentation generated by <a href="https://github.com/jsdoc3/jsdoc">JSDoc 4.0.4</a> on Wed Dec 04 2024 00:50:11 GMT+0000 (Coordinated Universal Time) using the <a href="https://github.com/clenemt/docdash">docdash</a> theme.
 </footer>
 
 <script>prettyPrint();</script>

diff --git a/docs/SummarizedExperiment.html b/docs/SummarizedExperiment.html
@@ -1587,7 +1587,7 @@ <h5 class="h5-returns">Returns:</h5>
 <br class="clear">
 
 <footer>
-    Documentation generated by <a href="https://github.com/jsdoc3/jsdoc">JSDoc 4.0.4</a> on Tue Dec 03 2024 17:58:57 GMT+0000 (Coordinated Universal Time) using the <a href="https://github.com/clenemt/docdash">docdash</a> theme.
+    Documentation generated by <a href="https://github.com/jsdoc3/jsdoc">JSDoc 4.0.4</a> on Wed Dec 04 2024 00:50:11 GMT+0000 (Coordinated Universal Time) using the <a href="https://github.com/clenemt/docdash">docdash</a> theme.
 </footer>
 
 <script>prettyPrint();</script>

diff --git a/docs/SummarizedExperiment.js.html b/docs/SummarizedExperiment.js.html
@@ -201,7 +201,7 @@ <h1 class="page-title">SummarizedExperiment.js</h1>
 <br class="clear">
 
 <footer>
-    Documentation generated by <a href="https://github.com/jsdoc3/jsdoc">JSDoc 4.0.4</a> on Tue Dec 03 2024 17:58:57 GMT+0000 (Coordinated Universal Time) using the <a href="https://github.com/clenemt/docdash">docdash</a> theme.
+    Documentation generated by <a href="https://github.com/jsdoc3/jsdoc">JSDoc 4.0.4</a> on Wed Dec 04 2024 00:50:11 GMT+0000 (Coordinated Universal Time) using the <a href="https://github.com/clenemt/docdash">docdash</a> theme.
 </footer>
 
 <script>prettyPrint();</script>

diff --git a/docs/decode.js.html b/docs/decode.js.html
@@ -73,6 +73,9 @@ <h1 class="page-title">decode.js</h1>
 
     let out = await decompress(x);
     convertByteOrder(out, order, 4);
+
+    // Javascript always uses 2's complement for Int32Arrays, see https://262.ecma-international.org/6.0/#sec-typedarray-objects,
+    // so we should be fine with just casting the bytes to a Int32Array.
     let res = new Int32Array(out.buffer);
     if (missing == "raw") {
         return res;
@@ -134,6 +137,9 @@ <h1 class="page-title">decode.js</h1>
 export async function decodeDoubles(x, order) {
     let out = await decompress(x);
     convertByteOrder(out, order, 8);
+
+    // This should always use IEEE754, see https://262.ecma-international.org/6.0/#sec-typedarray-objects,
+    // so we should be fine with just reinterpreting the bytes as doubles.
     return new Float64Array(out.buffer);
 }
 
@@ -232,7 +238,7 @@ <h1 class="page-title">decode.js</h1>
 <br class="clear">
 
 <footer>
-    Documentation generated by <a href="https://github.com/jsdoc3/jsdoc">JSDoc 4.0.4</a> on Tue Dec 03 2024 17:58:57 GMT+0000 (Coordinated Universal Time) using the <a href="https://github.com/clenemt/docdash">docdash</a> theme.
+    Documentation generated by <a href="https://github.com/jsdoc3/jsdoc">JSDoc 4.0.4</a> on Wed Dec 04 2024 00:50:11 GMT+0000 (Coordinated Universal Time) using the <a href="https://github.com/clenemt/docdash">docdash</a> theme.
 </footer>
 
 <script>prettyPrint();</script>

diff --git a/docs/global.html b/docs/global.html
@@ -148,7 +148,7 @@ <h4 class="name" id="decode"><span class="type-signature"></span>decode<span cla
 
     <dt class="tag-source">Source:</dt>
     <dd class="tag-source"><ul class="dummy"><li>
-        <a href="decode.js.html">decode.js</a>, <a href="decode.js.html#line153">line 153</a>
+        <a href="decode.js.html">decode.js</a>, <a href="decode.js.html#line159">line 159</a>
     </li></ul></dd>
 
 
@@ -511,7 +511,7 @@ <h4 class="name" id="decodeBooleans"><span class="type-signature"></span>decodeB
 
     <dt class="tag-source">Source:</dt>
     <dd class="tag-source"><ul class="dummy"><li>
-        <a href="decode.js.html">decode.js</a>, <a href="decode.js.html#line99">line 99</a>
+        <a href="decode.js.html">decode.js</a>, <a href="decode.js.html#line105">line 105</a>
     </li></ul></dd>
 
 
@@ -670,7 +670,7 @@ <h4 class="name" id="decodeDeltaIndices"><span class="type-signature"></span>dec
 
     <dt class="tag-source">Source:</dt>
     <dd class="tag-source"><ul class="dummy"><li>
-        <a href="decode.js.html">decode.js</a>, <a href="decode.js.html#line69">line 69</a>
+        <a href="decode.js.html">decode.js</a>, <a href="decode.js.html#line72">line 72</a>
     </li></ul></dd>
 
 
@@ -852,7 +852,7 @@ <h4 class="name" id="decodeDoubles"><span class="type-signature"></span>decodeDo
 
     <dt class="tag-source">Source:</dt>
     <dd class="tag-source"><ul class="dummy"><li>
-        <a href="decode.js.html">decode.js</a>, <a href="decode.js.html#line85">line 85</a>
+        <a href="decode.js.html">decode.js</a>, <a href="decode.js.html#line88">line 88</a>
     </li></ul></dd>
 
 
@@ -1365,7 +1365,7 @@ <h4 class="name" id="decodeStrings"><span class="type-signature"></span>decodeSt
 
     <dt class="tag-source">Source:</dt>
     <dd class="tag-source"><ul class="dummy"><li>
-        <a href="decode.js.html">decode.js</a>, <a href="decode.js.html#line122">line 122</a>
+        <a href="decode.js.html">decode.js</a>, <a href="decode.js.html#line128">line 128</a>
     </li></ul></dd>
 
 
@@ -1523,7 +1523,7 @@ <h5 class="h5-returns">Returns:</h5>
 <br class="clear">
 
 <footer>
-    Documentation generated by <a href="https://github.com/jsdoc3/jsdoc">JSDoc 4.0.4</a> on Tue Dec 03 2024 17:58:57 GMT+0000 (Coordinated Universal Time) using the <a href="https://github.com/clenemt/docdash">docdash</a> theme.
+    Documentation generated by <a href="https://github.com/jsdoc3/jsdoc">JSDoc 4.0.4</a> on Wed Dec 04 2024 00:50:11 GMT+0000 (Coordinated Universal Time) using the <a href="https://github.com/clenemt/docdash">docdash</a> theme.
 </footer>
 
 <script>prettyPrint();</script>

diff --git a/docs/index.html b/docs/index.html
@@ -97,7 +97,7 @@ <h2>Quick start</h2>
     if (!res.ok) {
         throw new Error(&quot;oops, failed to retrieve range from '&quot; + path + &quot;' (&quot; + String(res.status) + &quot;)&quot;);
     }
-    let output = await res.bytes();
+    let output = new Uint8Array(await res.arrayBuffer());
     return output.slice(0, end - start); // trim off any excess junk
 };
 </code></pre>
@@ -191,7 +191,7 @@ <h2>More reading</h2>
 <br class="clear">
 
 <footer>
-    Documentation generated by <a href="https://github.com/jsdoc3/jsdoc">JSDoc 4.0.4</a> on Tue Dec 03 2024 17:58:57 GMT+0000 (Coordinated Universal Time) using the <a href="https://github.com/clenemt/docdash">docdash</a> theme.
+    Documentation generated by <a href="https://github.com/jsdoc3/jsdoc">JSDoc 4.0.4</a> on Wed Dec 04 2024 00:50:11 GMT+0000 (Coordinated Universal Time) using the <a href="https://github.com/clenemt/docdash">docdash</a> theme.
 </footer>
 
 <script>prettyPrint();</script>