Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

works with variable length sequences #46

Open
wants to merge 1 commit into
base: main
Choose a base branch
from

Conversation

akmorrow13
Copy link

This code accounts for cases where sequences in the one hot encodings are variable length. In these cases, we don't include seqlets that don't overlap any bp for a sequence. Note that this will still include seqlets that overhang off the end of the sequence (ie a seqlet ATGCNNNNNNNN would be valid)

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

1 participant